annotate rDiff/src/locfit/Source/design.h @ 2:233c30f91d66

updated python based GFF parsing module which will handle GTF/GFF/GFF3 file types
author vipints <vipin@cbio.mskcc.org>
date Tue, 08 Oct 2013 07:15:44 -0400
parents 0f80a5141704
children
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1 /*
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2 * The design structure used in Locfit, and associated macro definitions.
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3 */
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5 typedef struct {
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6 int des_init_id;
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7 double *wk;
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8 Sint *ind;
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9 int lwk, lind;
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10
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11 double *xev; /* fitting point, length p */
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12 double *X; /* design matrix, length n*p */
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13 double *w, *di, *res, *th, *wd, h;
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14 double *V, *P; /* matrices with length p*p */
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15 double *f1, *ss, *oc, *cf; /* work vectors, length p */
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16 double llk, smwt;
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17 jacobian xtwx; /* to store X'WVX and decomposition */
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18 int cfn[1+MXDIM], ncoef;
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19 Sint *fix; /* integer vector for fixed coefficients. */
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20 int (*itype)(); /* density integration function */
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21 int n, p;
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22 int (*vfun)(); /* pointer to the vertex processing function. */
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23 } design;
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24
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25 #define cfn(des,i) (des->cfn[i])
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26 #define d_x(des) ((des)->X)
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27 #define d_xi(des,i) (&(des)->X[i*((des)->p)])
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28 #define d_xij(des,i,j) ((des)->X[i*((des)->p)+j])
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29 #define is_fixed(des,i) ((des)->fix[i]==1)
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30 #define DES_INIT_ID 34988372
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31
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32 extern int des_reqd(), des_reqi();