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1 #/bin/bash
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2 include ../bin/rdiff_config.sh
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3
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4 set -e
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5
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6 echo
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7 echo ${PROG}: This program is part of the rDiff version $RDIFF_VERSION.
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8 echo
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9 echo rDiff performs differential expression testing from RNA-Seq measurements.
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10 echo
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11
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12 if [ -z "$1" -o "$1" == '--help' ];
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13 then
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14 echo Usage: $0 poisson\|param\|nonparam
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15 echo " or:" $0 --help
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16 false
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17 fi
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18 if [ "$1" != 'poisson' -a "$1" != 'param' -a "$1" != 'nonparam' ];
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19 then
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20 echo invalid parameter: $1
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21 false
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22 fi
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23
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24
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25
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26 ../bin/rdiff -o results -d data/ -a example_condition_A_replicate_1.bam,example_condition_A_replicate_2.bam -b example_condition_B_replicate_1.bam,example_condition_B_replicate_2.bam -g data/genes_example.gff3 -m $1
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