Mercurial > repos > vipints > rdiff
comparison rDiff/INSTALL @ 0:0f80a5141704
version 0.3 uploaded
| author | vipints |
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| date | Thu, 14 Feb 2013 23:38:36 -0500 |
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| -1:000000000000 | 0:0f80a5141704 |
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| 1 To setup rDiff, please follow these steps: | |
| 2 | |
| 3 1) Download the SAMTools (version 0.1.7) from http://samtools.sourceforge.net/ | |
| 4 and install it. You need to add the flag -fPIC in the SAMTools Makefile for compilation. | |
| 5 | |
| 6 2) Change to directory that contains rDiff and configure rDiff by typing: | |
| 7 | |
| 8 ./configure | |
| 9 | |
| 10 this etects and stores paths of dependencies necessary to compile and run rDiff. | |
| 11 You can also set these variables manually using the interactive configuration: | |
| 12 | |
| 13 ./configure -i | |
| 14 | |
| 15 3) To compile rDiff, type: | |
| 16 | |
| 17 make | |
| 18 | |
| 19 4) When successfully completed, rDiff is usable. Check out the <Examples>: | |
| 20 | |
| 21 make example | |
| 22 | |
| 23 This will download an example dataset and run the rDiff.parametric on it. | |
| 24 You can also run rDiff.parametric, rDiff.nonparametric or rDiff.poisson by typing: | |
| 25 | |
| 26 make more_examples |