Mercurial > repos > vipints > rdiff
comparison rDiff/examples/run_example.sh @ 0:0f80a5141704
version 0.3 uploaded
| author | vipints |
|---|---|
| date | Thu, 14 Feb 2013 23:38:36 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:0f80a5141704 |
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| 1 #/bin/bash | |
| 2 include ../bin/rdiff_config.sh | |
| 3 | |
| 4 set -e | |
| 5 | |
| 6 echo | |
| 7 echo ${PROG}: This program is part of the rDiff version $RDIFF_VERSION. | |
| 8 echo | |
| 9 echo rDiff performs differential expression testing from RNA-Seq measurements. | |
| 10 echo | |
| 11 | |
| 12 if [ -z "$1" -o "$1" == '--help' ]; | |
| 13 then | |
| 14 echo Usage: $0 poisson\|param\|nonparam | |
| 15 echo " or:" $0 --help | |
| 16 false | |
| 17 fi | |
| 18 if [ "$1" != 'poisson' -a "$1" != 'param' -a "$1" != 'nonparam' ]; | |
| 19 then | |
| 20 echo invalid parameter: $1 | |
| 21 false | |
| 22 fi | |
| 23 | |
| 24 | |
| 25 | |
| 26 ../bin/rdiff -o results -d data/ -a example_condition_A_replicate_1.bam,example_condition_A_replicate_2.bam -b example_condition_B_replicate_1.bam,example_condition_B_replicate_2.bam -g data/genes_example.gff3 -m $1 |