Mercurial > repos > vipints > rdiff

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  rDiff version 0.3
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http://bioweb.me/rdiff

DESCRIPTION
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rDiff performs differential expression testing and
creates a list of gene names with corresponding
p-values.

REQUIREMENTS
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- Octave/Matlab >=3.4
- Python >=2.6.5 and Scipy >=0.7.1
- SAMTools >= 0.1.7

GETTING STARTED
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To install rDiff and the required software please
follow the instructions in INSTALL in this directory.

CONTENTS
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All relevant scripts for rDiff are located in the
subdirectory src. rdiff.sh is the main script to
start rDiff.

    ./bin
    Contains rdiff_config.sh file which is used for the configuration.
    According to your platform, the default file will be changed.

    ./galaxy
    Galaxy tool configuration files

    ./tools
    A python based GFF parsing program. Also contains small utils
    programs.

    ./examples
    This sub-directory contains all data for running a functional
    tests.

    ./mex
    matlab executable files.

LICENSE
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rDiff is licensed under the GPL version 3 or any later version
(cf. LICENSE).

CITE US
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If you use rDiff in your research you are kindly asked to cite
the following publication:

Philipp Drewe, Oliver Stegle, Lisa Hartmann, Andŕe Kahles,
Regina Bohnert, Andreas Wachter, Karsten Borgwardt, Gunnar Raetsch,
Accurate Detection of Differential RNA Processing, NAR, 2013

COPYRIGHT
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Copyright (C)
        2009-2012 Friedrich Miescher Laboratory of the Max Planck Society, Tubingen, Germany
        2012-2013 Memorial Sloan-Kettering Cancer Center, New York City, USA

CONTACT
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vipin@cbio.mskcc.org
author	vipints
date	Thu, 14 Feb 2013 23:38:36 -0500
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