Mercurial > repos > vipints > rdiff
view rDiff/src/locfit/Source/mexlf.c @ 2:233c30f91d66
updated python based GFF parsing module which will handle GTF/GFF/GFF3 file types
author | vipints <vipin@cbio.mskcc.org> |
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date | Tue, 08 Oct 2013 07:15:44 -0400 |
parents | 0f80a5141704 |
children |
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/*================================================================= * mexlocfit.c * * starting a locfit interface. * /* $Revision: 1.5 $ */ #include "mex.h" #include "lfev.h" design des; lfit lf; int lf_error; extern void lfmxdata(), lfmxsp(), lfmxevs(); void mexFunction(int nlhs,mxArray *plhs[],int nrhs,const mxArray *prhs[]) { int d, i, nvc[5], nvm, vc, nv, nc, mvc, lw[7]; double *y; mxArray *iwkc, *temparray; const char * fpcnames[] = {"evaluation_points","fitted_values","evaluation_vectors","fit_limits","family_link","kappa"}; const char * evsnames[] = {"cell","splitvar","lo","hi"}; mut_redirect(mexPrintf); if (nrhs != 3) mexErrMsgTxt("mexlf requires 3 inputs."); lf_error = 0; lfit_alloc(&lf); lfit_init(&lf); lfmxdata(&lf.lfd,prhs[0]); d = lf.lfd.d; lfmxsp(&lf.sp,prhs[2],d); lfmxevs(&lf,prhs[1]); guessnv(&lf.evs,&lf.sp,&lf.mdl,lf.lfd.n,d,lw,nvc); nvm = lf.fp.nvm = nvc[0]; vc = nvc[2]; if (ev(&lf.evs) != EPRES) lf.fp.xev = mxCalloc(nvm*d,sizeof(double)); lf.fp.lev = nvm*d; lf.fp.wk = lf.fp.coef = mxCalloc(lw[1],sizeof(double)); lf.fp.lwk = lw[1]; lf.evs.iwk = mxCalloc(lw[2],sizeof(int)); lf.evs.liw = lw[2]; plhs[1] = mxCreateDoubleMatrix(1,lw[3],mxREAL); lf.pc.wk = mxGetPr(plhs[1]); lf.pc.lwk = lw[3]; lf.fp.kap = mxCalloc(lw[5],sizeof(double)); /* should also allocate design here */ if (!lf_error) startmodule(&lf,&des,NULL,NULL); /* now, store the results: plhs[0] stores informtion about fit points and evaluation structure. it is now a matlab structure, not a cell fit_points.evaluation_points - matrix of evaluation points. fit_points.fitted_values - matrix fitted values etc. fit_points.evaluation_vectors - structure of 'integer' vectors {cell,splitvar,lo,hi} fit_points.fit_limits - fit limit (matrix with 2 cols). fit_points.family_link - [familt link] numeric vector. fit_points.kappa - kap vector. */ plhs[0] = mxCreateStructMatrix(1,1,6,fpcnames); if ( plhs[0] == NULL ) { printf("Problem with CreateStructMatrix for plhs[0]\n");fflush(stdout); } mxSetField(plhs[0],0,"evaluation_points",mxCreateDoubleMatrix(d,lf.fp.nv,mxREAL)); memcpy(mxGetPr(mxGetField(plhs[0],0,"evaluation_points")), lf.fp.xev, d*lf.fp.nv*sizeof(double)); mxSetField(plhs[0],0,"fitted_values",mxCreateDoubleMatrix(lf.fp.nv,lf.mdl.keepv,mxREAL)); for (i=0; i<lf.mdl.keepv; i++) memcpy(&mxGetPr(mxGetField(plhs[0],0,"fitted_values"))[i*lf.fp.nv], &lf.fp.coef[i*nvm], lf.fp.nv*sizeof(double)); /* another bit to save here? -- split values, kdtree */ temparray = mxCreateStructMatrix(1,1,4,evsnames); if ( temparray == NULL ) { printf("Problem with CreateStructMatrix for temparray\n");fflush(stdout); } mxSetField(plhs[0],0,"evaluation_vectors",temparray); iwkc = mxGetField(plhs[0],0,"evaluation_vectors"); nv = lf.fp.nv; nc = lf.evs.nce; mvc = (nv>nc) ? nv : nc; mxSetField(iwkc,0,"cell",mxCreateDoubleMatrix(vc,nc,mxREAL)); /* ce */ mxSetField(iwkc,0,"splitvar",mxCreateDoubleMatrix(1,mvc,mxREAL)); /* s */ mxSetField(iwkc,0,"lo",mxCreateDoubleMatrix(1,mvc,mxREAL)); /* lo */ mxSetField(iwkc,0,"hi",mxCreateDoubleMatrix(1,mvc,mxREAL)); /* hi */ y = mxGetPr(mxGetField(iwkc,0,"cell")); for (i=0; i<vc*nc; i++) y[i] = lf.evs.ce[i]; y = mxGetPr(mxGetField(iwkc,0,"splitvar")); for (i=0; i<mvc; i++) y[i] = lf.evs.s[i]; y = mxGetPr(mxGetField(iwkc,0,"lo")); for (i=0; i<mvc; i++) y[i] = lf.evs.lo[i]; y = mxGetPr(mxGetField(iwkc,0,"hi")); for (i=0; i<mvc; i++) y[i] = lf.evs.hi[i]; mxSetField(plhs[0],0,"fit_limits",mxCreateDoubleMatrix(d,2,mxREAL)); memcpy(mxGetPr(mxGetField(plhs[0],0,"fit_limits")), lf.evs.fl, 2*d*sizeof(double)); mxSetField(plhs[0],0,"family_link",mxCreateDoubleMatrix(1,2,mxREAL)); y = mxGetPr(mxGetField(plhs[0],0,"family_link")); y[0] = fam(&lf.sp); y[1] = link(&lf.sp); mxSetField(plhs[0],0,"kappa",mxCreateDoubleMatrix(1,lf.mdl.keepc,mxREAL)); memcpy(mxGetPr(mxGetField(plhs[0],0,"kappa")),lf.fp.kap,lf.mdl.keepc*sizeof(double)); }