Mercurial > repos > vipints > rdiff
view rDiff/src/locfit/Source/mut.h @ 2:233c30f91d66
updated python based GFF parsing module which will handle GTF/GFF/GFF3 file types
author | vipints <vipin@cbio.mskcc.org> |
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date | Tue, 08 Oct 2013 07:15:44 -0400 |
parents | 0f80a5141704 |
children |
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/* * Copyright 1996-2006 Catherine Loader. */ /* * Headers for math utility functions. */ #ifndef I_MUT_H #define I_MUT_H #include <stdio.h> #include <stdlib.h> #include <string.h> #include <math.h> typedef int (*prf)(); extern prf mut_printf; extern void mut_redirect(); typedef struct { double *Z; /* jacobian matrix, length p*p */ double *Q; /* eigenvalue matrix, length p*p */ double *wk; /* work vector in eig_solve, length p */ double *dg; /* diag vector in eigd, length p */ int p; /* dimension */ int st; /* status */ int sm; /* requested decomposition */ } jacobian; /* m_jacob.c */ extern int jac_reqd(); extern double *jac_alloc(); extern void jacob_dec(), chol_dec(), eig_dec(); extern int jacob_solve(), chol_solve(), eig_solve(); extern int jacob_hsolve(),chol_hsolve(),eig_hsolve(); extern int jacob_isolve(),chol_isolve(),eig_isolve(); extern double jacob_qf(), chol_qf(), eig_qf(); extern int jacob_mult(), chol_mult(); /* m_max.c */ extern double max_grid(), max_golden(), max_quad(), max_nr(); /* maxbv.c */ extern double maxbvgrid(), maxbvstep(), maxquadstep(), maxbv(), maxbvq(); /* quadmin.c */ extern void quadmin(), project(), resproj(), conquadmin(); /* m_qr.c */ extern void qr(), qrinvx(), qrtinvx(), qrsolv(); /* m_svd.c */ extern void svd(), hsvdsolve(); extern int svdsolve(); /* m_solve.c */ extern double solve_bisect(), solve_secant(), solve_nr(), solve_fp(); /* m_vector.c */ extern void setzero(), unitvec(), addouter(); extern void matrixmultiply(), multmatscal(), transpose(); extern double innerprod(), m_trace(), vecsum(); #define BDF_NONE 0 #define BDF_EXPLEFT 1 #define BDF_EXPRIGHT 2 /* return codes for functions optimized by max_nr */ #define NR_OK 0 #define NR_INVALID 1 #define NR_BREAK 2 #define NR_REDUCE 3 #define NR_NCON 10 #define NR_NDIV 11 /* jacobian status definitions */ #define JAC_RAW 0 #define JAC_CHOL 1 #define JAC_EIG 2 #define JAC_EIGD 3 /* Numerical Integration Stuff */ #define MXRESULT 5 #define MXIDIM 10 /* max. dimension */ extern void simpsonm(), simpson4(), integ_disc(), integ_circ(); extern void integ_sphere(), monte(), rn3(); extern double simpson(), sptarea(); /* Density, distribution stuff */ #ifndef PI #define PI 3.141592653589793238462643 #endif #define S2PI 2.506628274631000502415765 /* sqrt(2*pi) */ #define PIx2 6.283185307179586476925286 /* 2*pi */ #define SQRPI 1.772453850905516027298 /* sqrt(pi) */ #define HF_LG_PIx2 0.918938533204672741780329736406 /* 0.5*log(2*pi) */ #define SQRT2 1.4142135623730950488 /* sqrt(2.0) */ #define gold_rat 0.6180339887498948482045870 /* (sqrt(5.0)-1)/2 */ #define LOG_ZERO -1e100 #define D_0 ((give_log) ? LOG_ZERO : 0.0) #define D_1 ((give_log) ? 0.0 : 1.0) #define DEXP(x) ((give_log) ? (x) : exp(x)) #define FEXP(f,x) ((give_log) ? -0.5*log(f)+(x) : exp(x)/sqrt(f)) #define INVALID_PARAMS 0.0 extern double stirlerr(), bd0(); extern double dbinom_raw(), dpois_raw(); extern double dbinom(), dpois(), dnbinom(), dbeta(), dgamma(), dt(), df(), dhyper(); extern double dchisq(); extern double igamma(), ibeta(); extern double pf(), pchisq(); #define pchisq(x,df) igamma((x)/2.0,(df)/2.0) /* order.c */ extern void mut_order(); /* erf.c */ extern double mut_erf(), mut_erfc(), mut_pnorm(); /* lgamma.c */ extern double mut_lgamma(), mut_lgammai(); /* math.c */ extern double mut_exp(), mut_daws(), ptail(), logit(), expit(); extern int factorial(); #endif /* define I_MUT_H */