Mercurial > repos > vipints > rdiff
view rDiff/src/octave/intersect.m @ 2:233c30f91d66
updated python based GFF parsing module which will handle GTF/GFF/GFF3 file types
author | vipints <vipin@cbio.mskcc.org> |
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date | Tue, 08 Oct 2013 07:15:44 -0400 |
parents | 0f80a5141704 |
children |
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## Copyright (C) 2000-2012 Paul Kienzle ## Copyright (C) 2008-2009 Jaroslav Hajek ## ## This file is part of Octave. ## ## Octave is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or (at ## your option) any later version. ## ## Octave is distributed in the hope that it will be useful, but ## WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU ## General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with Octave; see the file COPYING. If not, see ## <http://www.gnu.org/licenses/>. ## -*- texinfo -*- ## @deftypefn {Function File} {} intersect (@var{a}, @var{b}) ## @deftypefnx {Function File} {[@var{c}, @var{ia}, @var{ib}] =} intersect (@var{a}, @var{b}) ## ## Return the elements in both @var{a} and @var{b}, sorted in ascending ## order. If @var{a} and @var{b} are both column vectors return a column ## vector, otherwise return a row vector. ## @var{a}, @var{b} may be cell arrays of string(s). ## ## Return index vectors @var{ia} and @var{ib} such that @code{a(ia)==c} and ## @code{b(ib)==c}. ## ## @end deftypefn ## @seealso{unique, union, setxor, setdiff, ismember} function [c, ia, ib] = intersect (a, b, varargin) if (nargin < 2 || nargin > 3) print_usage (); endif ## [a, b] = validargs ("intersect", a, b, varargin{:}); if (isempty (a) || isempty (b)) c = ia = ib = []; else ## form a and b into sets if (nargout > 1) [a, ja] = unique (a, varargin{:}); [b, jb] = unique (b, varargin{:}); else a = unique (a, varargin{:}); b = unique (b, varargin{:}); endif if (nargin > 2) c = [a; b]; [c, ic] = sortrows (c); ii = find (all (c(1:end-1,:) == c(2:end,:), 2)); c = c(ii,:); len_a = rows (a); else c = [a(:); b(:)]; [c, ic] = sort (c); ## [a(:);b(:)](ic) == c if (iscellstr (c)) ii = find (strcmp (c(1:end-1), c(2:end))); else ii = find (c(1:end-1) == c(2:end)); endif c = c(ii); len_a = length (a); endif if (nargout > 1) ia = ja(ic(ii)); ## a(ia) == c ib = jb(ic(ii+1) - len_a); ## b(ib) == c endif if (nargin == 2 && (size (b, 1) == 1 || size (a, 1) == 1)) c = c.'; endif endif endfunction %!# Test the routine for index vectors ia and ib %!test %! a = [3 2 4 5 7 6 5 1 0 13 13]; %! b = [3 5 12 1 1 7]; %! [c,ia,ib] = intersect(a,b); %! assert(c,[1 3 5 7]); %! assert(ia,[8 1 7 5]); %! assert(ib,[5 1 2 6]); %! assert(a(ia),c); %! assert(b(ib),c); %!test %! a = [1,1,2;1,4,5;2,1,7]; %! b = [1,4,5;2,3,4;1,1,2;9,8,7]; %! [c,ia,ib] = intersect(a,b,'rows'); %! assert(c,[1,1,2;1,4,5]); %! assert(ia,[1;2]); %! assert(ib,[3;1]); %! assert(a(ia,:),c); %! assert(b(ib,:),c); %!test %! a = [1 1 1 2 2 2]; %! b = [1 2 3 4 5 6]; %! c = intersect(a,b); %! assert(c, [1,2]); %!test %! a = [1 2 3 4; 5 6 7 8; 9 10 11 12]; %! [b, ia, ib] = intersect(a, a, "rows"); %! assert(b, a); %! assert(ia, [1:3]'); %! assert(ib, [1:3]');