Mercurial > repos > vipints > rdiff
view rDiff/src/variance/predict_variance.m @ 2:233c30f91d66
updated python based GFF parsing module which will handle GTF/GFF/GFF3 file types
author | vipints <vipin@cbio.mskcc.org> |
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date | Tue, 08 Oct 2013 07:15:44 -0400 |
parents | 0f80a5141704 |
children |
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function [VARIANCE]=predict_variance(MEANS,VARIANCE_FCT) %predict the variances for the means if isstruct(VARIANCE_FCT) %use the estimated variance function VARIANCE=exp(predict(VARIANCE_FCT,log(full(MEANS)))); else %use parmeters a,b,c to compute the variance function a=VARIANCE_FCT(1); b=VARIANCE_FCT(2); c=VARIANCE_FCT(3); VARIANCE=a+MEANS*b+(MEANS.^2)*c; end %Make sure the variance is bigger than the poisson %variance. Otherwise the NB cannot be definied VARIANCE=max([VARIANCE,MEANS*(1e-8)],[],2); return