Mercurial > repos > watsocam > palom

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/palom commit 08d9f2d59c26e67a162d75ae6e8b5fa734ab7b3c
author goeckslab
date Tue, 06 Sep 2022 21:15:56 +0000
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1:69f8e01b2e17 2:e30f622ef2c3
1 FROM python:3.7.12
2
3 ENV OPS_VERSION=3.4.1
4
5 ENV PALOM_VERSION=2022.8.2
6
7 RUN apt update -y && apt install -y openslide-tools python3-opencv
8
9 RUN cd /opt && \
10 wget https://github.com/openslide/openslide/releases/download/v$OPS_VERSION/openslide-$OPS_VERSION.tar.gz && \
11 tar -zxvf openslide-$OPS_VERSION.tar.gz && \
12 cd openslide-$OPS_VERSION
13
14 RUN /opt/openslide-$OPS_VERSION/configure && \
15 make && \
16 make install
17
18 RUN pip install zarr==2.10.3 pandas palom==$PALOM_VERSION