annotate BSseeker2/.idea/workspace.xml @ 1:8b26adf64adc draft default tip

V2.0.5
author weilong-guo
date Tue, 05 Nov 2013 01:55:39 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
weilong-guo
parents:
diff changeset
1 <?xml version="1.0" encoding="UTF-8"?>
weilong-guo
parents:
diff changeset
2 <project version="4">
weilong-guo
parents:
diff changeset
3 <component name="ChangeListManager">
weilong-guo
parents:
diff changeset
4 <list default="true" id="172bd281-b8c2-4544-b510-26029a6498b7" name="Default" comment="" />
weilong-guo
parents:
diff changeset
5 <ignored path="BSseeker2.iws" />
weilong-guo
parents:
diff changeset
6 <ignored path=".idea/workspace.xml" />
weilong-guo
parents:
diff changeset
7 <file path="/Dummy.txt" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383633767371" ignored="false" />
weilong-guo
parents:
diff changeset
8 <file path="/a.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1365491538292" ignored="false" />
weilong-guo
parents:
diff changeset
9 <file path="/bs_rrbs.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383621399873" ignored="false" />
weilong-guo
parents:
diff changeset
10 <file path="/bs_pair_end.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383622148043" ignored="false" />
weilong-guo
parents:
diff changeset
11 <file path="/bs_single_end.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383571511133" ignored="false" />
weilong-guo
parents:
diff changeset
12 <file path="/bs_align_utils.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1381998901080" ignored="false" />
weilong-guo
parents:
diff changeset
13 <file path="/rrbs_build.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1367304455503" ignored="false" />
weilong-guo
parents:
diff changeset
14 <file path="/utils.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383633738005" ignored="false" />
weilong-guo
parents:
diff changeset
15 <file path="/README.md" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383632256060" ignored="false" />
weilong-guo
parents:
diff changeset
16 <file path="/bs_seeker2-align.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383632641037" ignored="false" />
weilong-guo
parents:
diff changeset
17 <file path="/bs_seeker2-build.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383632528537" ignored="false" />
weilong-guo
parents:
diff changeset
18 <file path="/bs_seeker2-call_methylation.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1377909319118" ignored="false" />
weilong-guo
parents:
diff changeset
19 <file path="/rrbs_build_new.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1366402518261" ignored="false" />
weilong-guo
parents:
diff changeset
20 <file path="/bs_rrbs_new.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1366448702885" ignored="false" />
weilong-guo
parents:
diff changeset
21 <file path="$APPLICATION_HOME_DIR$/lib/pycharm.jar!/resources/relaxng.rng" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1366311004094" ignored="false" />
weilong-guo
parents:
diff changeset
22 <file path="/wg_build.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383623123179" ignored="false" />
weilong-guo
parents:
diff changeset
23 <file path="/bs_seeker2_wrapper.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1368857835824" ignored="false" />
weilong-guo
parents:
diff changeset
24 <file path="/bs_seeker2_wrapper.xml" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1382083103094" ignored="false" />
weilong-guo
parents:
diff changeset
25 <file path="/UPDATE" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1369021897154" ignored="false" />
weilong-guo
parents:
diff changeset
26 <file path="/RELEASE_NOTES" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383630679572" ignored="false" />
weilong-guo
parents:
diff changeset
27 <file path="/output.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1382096328368" ignored="false" />
weilong-guo
parents:
diff changeset
28 <file path="/bs_pair_end2.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1382863836790" ignored="false" />
weilong-guo
parents:
diff changeset
29 <file path="/bs_pair_end_2.py" changelist="172bd281-b8c2-4544-b510-26029a6498b7" time="1383060615712" ignored="false" />
weilong-guo
parents:
diff changeset
30 <option name="TRACKING_ENABLED" value="true" />
weilong-guo
parents:
diff changeset
31 <option name="SHOW_DIALOG" value="false" />
weilong-guo
parents:
diff changeset
32 <option name="HIGHLIGHT_CONFLICTS" value="true" />
weilong-guo
parents:
diff changeset
33 <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
weilong-guo
parents:
diff changeset
34 <option name="LAST_RESOLUTION" value="IGNORE" />
weilong-guo
parents:
diff changeset
35 </component>
weilong-guo
parents:
diff changeset
36 <component name="ChangesViewManager" flattened_view="true" show_ignored="false" />
weilong-guo
parents:
diff changeset
37 <component name="CreatePatchCommitExecutor">
weilong-guo
parents:
diff changeset
38 <option name="PATCH_PATH" value="" />
weilong-guo
parents:
diff changeset
39 </component>
weilong-guo
parents:
diff changeset
40 <component name="DaemonCodeAnalyzer">
weilong-guo
parents:
diff changeset
41 <disable_hints />
weilong-guo
parents:
diff changeset
42 </component>
weilong-guo
parents:
diff changeset
43 <component name="ExecutionTargetManager" SELECTED_TARGET="default_target" />
weilong-guo
parents:
diff changeset
44 <component name="FavoritesManager">
weilong-guo
parents:
diff changeset
45 <favorites_list name="BSseeker2">
weilong-guo
parents:
diff changeset
46 <favorite_root url="file://$PROJECT_DIR$/gpl-3.0.txt" type="psiFile" klass="com.intellij.ide.projectView.impl.nodes.PsiFileNode" />
weilong-guo
parents:
diff changeset
47 </favorites_list>
weilong-guo
parents:
diff changeset
48 </component>
weilong-guo
parents:
diff changeset
49 <component name="FileEditorManager">
weilong-guo
parents:
diff changeset
50 <leaf>
weilong-guo
parents:
diff changeset
51 <file leaf-file-name="README.md" pinned="false" current="false" current-in-tab="false">
weilong-guo
parents:
diff changeset
52 <entry file="file://$PROJECT_DIR$/README.md">
weilong-guo
parents:
diff changeset
53 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
54 <state line="77" column="25" selection-start="2888" selection-end="2895" vertical-scroll-proportion="-7.92">
weilong-guo
parents:
diff changeset
55 <folding />
weilong-guo
parents:
diff changeset
56 </state>
weilong-guo
parents:
diff changeset
57 </provider>
weilong-guo
parents:
diff changeset
58 </entry>
weilong-guo
parents:
diff changeset
59 </file>
weilong-guo
parents:
diff changeset
60 <file leaf-file-name="utils.py" pinned="false" current="true" current-in-tab="true">
weilong-guo
parents:
diff changeset
61 <entry file="file://$PROJECT_DIR$/bs_utils/utils.py">
weilong-guo
parents:
diff changeset
62 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
63 <state line="14" column="0" selection-start="176" selection-end="176" vertical-scroll-proportion="0.16103059">
weilong-guo
parents:
diff changeset
64 <folding />
weilong-guo
parents:
diff changeset
65 </state>
weilong-guo
parents:
diff changeset
66 </provider>
weilong-guo
parents:
diff changeset
67 </entry>
weilong-guo
parents:
diff changeset
68 </file>
weilong-guo
parents:
diff changeset
69 </leaf>
weilong-guo
parents:
diff changeset
70 </component>
weilong-guo
parents:
diff changeset
71 <component name="FindManager">
weilong-guo
parents:
diff changeset
72 <FindUsagesManager>
weilong-guo
parents:
diff changeset
73 <setting name="OPEN_NEW_TAB" value="false" />
weilong-guo
parents:
diff changeset
74 </FindUsagesManager>
weilong-guo
parents:
diff changeset
75 </component>
weilong-guo
parents:
diff changeset
76 <component name="Git.Settings">
weilong-guo
parents:
diff changeset
77 <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
weilong-guo
parents:
diff changeset
78 </component>
weilong-guo
parents:
diff changeset
79 <component name="GitLogSettings">
weilong-guo
parents:
diff changeset
80 <option name="myDateState">
weilong-guo
parents:
diff changeset
81 <MyDateState />
weilong-guo
parents:
diff changeset
82 </option>
weilong-guo
parents:
diff changeset
83 </component>
weilong-guo
parents:
diff changeset
84 <component name="IdeDocumentHistory">
weilong-guo
parents:
diff changeset
85 <option name="changedFiles">
weilong-guo
parents:
diff changeset
86 <list>
weilong-guo
parents:
diff changeset
87 <option value="$PROJECT_DIR$/bs_align/bs_align_utils.py" />
weilong-guo
parents:
diff changeset
88 <option value="$PROJECT_DIR$/galaxy/bs_seeker2_wrapper.py" />
weilong-guo
parents:
diff changeset
89 <option value="$PROJECT_DIR$/galaxy/bs_seeker2_wrapper.xml" />
weilong-guo
parents:
diff changeset
90 <option value="$PROJECT_DIR$/bs_align/output.py" />
weilong-guo
parents:
diff changeset
91 <option value="$PROJECT_DIR$/bs_align/bs_pair_end2.py" />
weilong-guo
parents:
diff changeset
92 <option value="$PROJECT_DIR$/bs_align/bs_pair_end_2.py" />
weilong-guo
parents:
diff changeset
93 <option value="$PROJECT_DIR$/bs_align/bs_rrbs.py" />
weilong-guo
parents:
diff changeset
94 <option value="$PROJECT_DIR$/bs_align/bs_single_end.py" />
weilong-guo
parents:
diff changeset
95 <option value="$PROJECT_DIR$/bs_align/bs_pair_end.py" />
weilong-guo
parents:
diff changeset
96 <option value="$PROJECT_DIR$/bs_index/wg_build.py" />
weilong-guo
parents:
diff changeset
97 <option value="$PROJECT_DIR$/bs_seeker2-call_methylation.py" />
weilong-guo
parents:
diff changeset
98 <option value="$PROJECT_DIR$/RELEASE_NOTES" />
weilong-guo
parents:
diff changeset
99 <option value="$PROJECT_DIR$/bs_seeker2-build.py" />
weilong-guo
parents:
diff changeset
100 <option value="$PROJECT_DIR$/bs_seeker2-align.py" />
weilong-guo
parents:
diff changeset
101 <option value="$PROJECT_DIR$/README.md" />
weilong-guo
parents:
diff changeset
102 <option value="$PROJECT_DIR$/bs_utils/utils.py" />
weilong-guo
parents:
diff changeset
103 </list>
weilong-guo
parents:
diff changeset
104 </option>
weilong-guo
parents:
diff changeset
105 </component>
weilong-guo
parents:
diff changeset
106 <component name="ProjectFrameBounds">
weilong-guo
parents:
diff changeset
107 <option name="x" value="53" />
weilong-guo
parents:
diff changeset
108 <option name="y" value="22" />
weilong-guo
parents:
diff changeset
109 <option name="width" value="1226" />
weilong-guo
parents:
diff changeset
110 <option name="height" value="778" />
weilong-guo
parents:
diff changeset
111 </component>
weilong-guo
parents:
diff changeset
112 <component name="ProjectLevelVcsManager" settingsEditedManually="false">
weilong-guo
parents:
diff changeset
113 <OptionsSetting value="true" id="Add" />
weilong-guo
parents:
diff changeset
114 <OptionsSetting value="true" id="Remove" />
weilong-guo
parents:
diff changeset
115 <OptionsSetting value="true" id="Checkout" />
weilong-guo
parents:
diff changeset
116 <OptionsSetting value="true" id="Update" />
weilong-guo
parents:
diff changeset
117 <OptionsSetting value="true" id="Status" />
weilong-guo
parents:
diff changeset
118 <OptionsSetting value="true" id="Edit" />
weilong-guo
parents:
diff changeset
119 <ConfirmationsSetting value="0" id="Add" />
weilong-guo
parents:
diff changeset
120 <ConfirmationsSetting value="0" id="Remove" />
weilong-guo
parents:
diff changeset
121 </component>
weilong-guo
parents:
diff changeset
122 <component name="ProjectReloadState">
weilong-guo
parents:
diff changeset
123 <option name="STATE" value="0" />
weilong-guo
parents:
diff changeset
124 </component>
weilong-guo
parents:
diff changeset
125 <component name="ProjectView">
weilong-guo
parents:
diff changeset
126 <navigator currentView="ProjectPane" proportions="" version="1" splitterProportion="0.5">
weilong-guo
parents:
diff changeset
127 <flattenPackages />
weilong-guo
parents:
diff changeset
128 <showMembers />
weilong-guo
parents:
diff changeset
129 <showModules />
weilong-guo
parents:
diff changeset
130 <showLibraryContents />
weilong-guo
parents:
diff changeset
131 <hideEmptyPackages />
weilong-guo
parents:
diff changeset
132 <abbreviatePackageNames />
weilong-guo
parents:
diff changeset
133 <autoscrollToSource />
weilong-guo
parents:
diff changeset
134 <autoscrollFromSource />
weilong-guo
parents:
diff changeset
135 <sortByType />
weilong-guo
parents:
diff changeset
136 </navigator>
weilong-guo
parents:
diff changeset
137 <panes>
weilong-guo
parents:
diff changeset
138 <pane id="Scope" />
weilong-guo
parents:
diff changeset
139 <pane id="ProjectPane">
weilong-guo
parents:
diff changeset
140 <subPane>
weilong-guo
parents:
diff changeset
141 <PATH>
weilong-guo
parents:
diff changeset
142 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
143 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
144 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
weilong-guo
parents:
diff changeset
145 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
146 </PATH>
weilong-guo
parents:
diff changeset
147 <PATH>
weilong-guo
parents:
diff changeset
148 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
149 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
150 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
weilong-guo
parents:
diff changeset
151 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
152 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
153 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
154 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
weilong-guo
parents:
diff changeset
155 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
156 </PATH>
weilong-guo
parents:
diff changeset
157 <PATH>
weilong-guo
parents:
diff changeset
158 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
159 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
160 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
weilong-guo
parents:
diff changeset
161 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
162 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
163 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
164 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
weilong-guo
parents:
diff changeset
165 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
166 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
167 <option name="myItemId" value="galaxy" />
weilong-guo
parents:
diff changeset
168 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
weilong-guo
parents:
diff changeset
169 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
170 </PATH>
weilong-guo
parents:
diff changeset
171 <PATH>
weilong-guo
parents:
diff changeset
172 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
173 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
174 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
weilong-guo
parents:
diff changeset
175 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
176 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
177 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
178 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
weilong-guo
parents:
diff changeset
179 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
180 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
181 <option name="myItemId" value="bs_utils" />
weilong-guo
parents:
diff changeset
182 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
weilong-guo
parents:
diff changeset
183 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
184 </PATH>
weilong-guo
parents:
diff changeset
185 <PATH>
weilong-guo
parents:
diff changeset
186 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
187 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
188 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
weilong-guo
parents:
diff changeset
189 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
190 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
191 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
192 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
weilong-guo
parents:
diff changeset
193 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
194 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
195 <option name="myItemId" value="bs_index" />
weilong-guo
parents:
diff changeset
196 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
weilong-guo
parents:
diff changeset
197 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
198 </PATH>
weilong-guo
parents:
diff changeset
199 <PATH>
weilong-guo
parents:
diff changeset
200 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
201 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
202 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.ProjectViewProjectNode" />
weilong-guo
parents:
diff changeset
203 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
204 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
205 <option name="myItemId" value="BSseeker2" />
weilong-guo
parents:
diff changeset
206 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
weilong-guo
parents:
diff changeset
207 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
208 <PATH_ELEMENT>
weilong-guo
parents:
diff changeset
209 <option name="myItemId" value="bs_align" />
weilong-guo
parents:
diff changeset
210 <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
weilong-guo
parents:
diff changeset
211 </PATH_ELEMENT>
weilong-guo
parents:
diff changeset
212 </PATH>
weilong-guo
parents:
diff changeset
213 </subPane>
weilong-guo
parents:
diff changeset
214 </pane>
weilong-guo
parents:
diff changeset
215 </panes>
weilong-guo
parents:
diff changeset
216 </component>
weilong-guo
parents:
diff changeset
217 <component name="PropertiesComponent">
weilong-guo
parents:
diff changeset
218 <property name="options.splitter.main.proportions" value="0.3" />
weilong-guo
parents:
diff changeset
219 <property name="WebServerToolWindowFactoryState" value="false" />
weilong-guo
parents:
diff changeset
220 <property name="recentsLimit" value="5" />
weilong-guo
parents:
diff changeset
221 <property name="options.lastSelected" value="reference.settingsdialog.IDE.editor.colors.Font" />
weilong-guo
parents:
diff changeset
222 <property name="FullScreen" value="false" />
weilong-guo
parents:
diff changeset
223 <property name="options.searchVisible" value="true" />
weilong-guo
parents:
diff changeset
224 <property name="options.splitter.details.proportions" value="0.2" />
weilong-guo
parents:
diff changeset
225 </component>
weilong-guo
parents:
diff changeset
226 <component name="PyConsoleOptionsProvider">
weilong-guo
parents:
diff changeset
227 <option name="myPythonConsoleState">
weilong-guo
parents:
diff changeset
228 <PyConsoleSettings />
weilong-guo
parents:
diff changeset
229 </option>
weilong-guo
parents:
diff changeset
230 <option name="myDjangoConsoleState">
weilong-guo
parents:
diff changeset
231 <PyConsoleSettings />
weilong-guo
parents:
diff changeset
232 </option>
weilong-guo
parents:
diff changeset
233 </component>
weilong-guo
parents:
diff changeset
234 <component name="RecentsManager">
weilong-guo
parents:
diff changeset
235 <key name="CopyFile.RECENT_KEYS">
weilong-guo
parents:
diff changeset
236 <recent name="$PROJECT_DIR$/bs_align" />
weilong-guo
parents:
diff changeset
237 <recent name="$PROJECT_DIR$/bs_index" />
weilong-guo
parents:
diff changeset
238 </key>
weilong-guo
parents:
diff changeset
239 </component>
weilong-guo
parents:
diff changeset
240 <component name="RunManager" selected="Python.output">
weilong-guo
parents:
diff changeset
241 <configuration default="false" name="output" type="PythonConfigurationType" factoryName="Python" temporary="true">
weilong-guo
parents:
diff changeset
242 <option name="INTERPRETER_OPTIONS" value="" />
weilong-guo
parents:
diff changeset
243 <option name="PARENT_ENVS" value="true" />
weilong-guo
parents:
diff changeset
244 <envs>
weilong-guo
parents:
diff changeset
245 <env name="PYTHONUNBUFFERED" value="1" />
weilong-guo
parents:
diff changeset
246 </envs>
weilong-guo
parents:
diff changeset
247 <option name="SDK_HOME" value="" />
weilong-guo
parents:
diff changeset
248 <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$/bs_align" />
weilong-guo
parents:
diff changeset
249 <option name="IS_MODULE_SDK" value="true" />
weilong-guo
parents:
diff changeset
250 <option name="ADD_CONTENT_ROOTS" value="true" />
weilong-guo
parents:
diff changeset
251 <option name="ADD_SOURCE_ROOTS" value="true" />
weilong-guo
parents:
diff changeset
252 <module name="BSseeker2" />
weilong-guo
parents:
diff changeset
253 <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
weilong-guo
parents:
diff changeset
254 <option name="SCRIPT_NAME" value="$PROJECT_DIR$/bs_align/output.py" />
weilong-guo
parents:
diff changeset
255 <option name="PARAMETERS" value="" />
weilong-guo
parents:
diff changeset
256 <RunnerSettings RunnerId="PythonCover" />
weilong-guo
parents:
diff changeset
257 <ConfigurationWrapper RunnerId="PythonCover" />
weilong-guo
parents:
diff changeset
258 <method />
weilong-guo
parents:
diff changeset
259 </configuration>
weilong-guo
parents:
diff changeset
260 <configuration default="true" type="PythonConfigurationType" factoryName="Python">
weilong-guo
parents:
diff changeset
261 <option name="INTERPRETER_OPTIONS" value="" />
weilong-guo
parents:
diff changeset
262 <option name="PARENT_ENVS" value="true" />
weilong-guo
parents:
diff changeset
263 <envs>
weilong-guo
parents:
diff changeset
264 <env name="PYTHONUNBUFFERED" value="1" />
weilong-guo
parents:
diff changeset
265 </envs>
weilong-guo
parents:
diff changeset
266 <option name="SDK_HOME" value="" />
weilong-guo
parents:
diff changeset
267 <option name="WORKING_DIRECTORY" value="" />
weilong-guo
parents:
diff changeset
268 <option name="IS_MODULE_SDK" value="false" />
weilong-guo
parents:
diff changeset
269 <option name="ADD_CONTENT_ROOTS" value="true" />
weilong-guo
parents:
diff changeset
270 <option name="ADD_SOURCE_ROOTS" value="true" />
weilong-guo
parents:
diff changeset
271 <module name="BSseeker2" />
weilong-guo
parents:
diff changeset
272 <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
weilong-guo
parents:
diff changeset
273 <option name="SCRIPT_NAME" value="" />
weilong-guo
parents:
diff changeset
274 <option name="PARAMETERS" value="" />
weilong-guo
parents:
diff changeset
275 <method />
weilong-guo
parents:
diff changeset
276 </configuration>
weilong-guo
parents:
diff changeset
277 <configuration default="true" type="tests" factoryName="Unittests">
weilong-guo
parents:
diff changeset
278 <option name="INTERPRETER_OPTIONS" value="" />
weilong-guo
parents:
diff changeset
279 <option name="PARENT_ENVS" value="true" />
weilong-guo
parents:
diff changeset
280 <envs />
weilong-guo
parents:
diff changeset
281 <option name="SDK_HOME" value="" />
weilong-guo
parents:
diff changeset
282 <option name="WORKING_DIRECTORY" value="" />
weilong-guo
parents:
diff changeset
283 <option name="IS_MODULE_SDK" value="false" />
weilong-guo
parents:
diff changeset
284 <option name="ADD_CONTENT_ROOTS" value="true" />
weilong-guo
parents:
diff changeset
285 <option name="ADD_SOURCE_ROOTS" value="true" />
weilong-guo
parents:
diff changeset
286 <module name="BSseeker2" />
weilong-guo
parents:
diff changeset
287 <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
weilong-guo
parents:
diff changeset
288 <option name="SCRIPT_NAME" value="" />
weilong-guo
parents:
diff changeset
289 <option name="CLASS_NAME" value="" />
weilong-guo
parents:
diff changeset
290 <option name="METHOD_NAME" value="" />
weilong-guo
parents:
diff changeset
291 <option name="FOLDER_NAME" value="" />
weilong-guo
parents:
diff changeset
292 <option name="TEST_TYPE" value="TEST_SCRIPT" />
weilong-guo
parents:
diff changeset
293 <option name="PATTERN" value="" />
weilong-guo
parents:
diff changeset
294 <option name="USE_PATTERN" value="false" />
weilong-guo
parents:
diff changeset
295 <option name="PUREUNITTEST" value="true" />
weilong-guo
parents:
diff changeset
296 <option name="PARAMS" value="" />
weilong-guo
parents:
diff changeset
297 <option name="USE_PARAM" value="false" />
weilong-guo
parents:
diff changeset
298 <method />
weilong-guo
parents:
diff changeset
299 </configuration>
weilong-guo
parents:
diff changeset
300 <configuration default="true" type="tests" factoryName="Doctests">
weilong-guo
parents:
diff changeset
301 <option name="INTERPRETER_OPTIONS" value="" />
weilong-guo
parents:
diff changeset
302 <option name="PARENT_ENVS" value="true" />
weilong-guo
parents:
diff changeset
303 <envs />
weilong-guo
parents:
diff changeset
304 <option name="SDK_HOME" value="" />
weilong-guo
parents:
diff changeset
305 <option name="WORKING_DIRECTORY" value="" />
weilong-guo
parents:
diff changeset
306 <option name="IS_MODULE_SDK" value="false" />
weilong-guo
parents:
diff changeset
307 <option name="ADD_CONTENT_ROOTS" value="true" />
weilong-guo
parents:
diff changeset
308 <option name="ADD_SOURCE_ROOTS" value="true" />
weilong-guo
parents:
diff changeset
309 <module name="BSseeker2" />
weilong-guo
parents:
diff changeset
310 <EXTENSION ID="PythonCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" runner="coverage.py" />
weilong-guo
parents:
diff changeset
311 <option name="SCRIPT_NAME" value="" />
weilong-guo
parents:
diff changeset
312 <option name="CLASS_NAME" value="" />
weilong-guo
parents:
diff changeset
313 <option name="METHOD_NAME" value="" />
weilong-guo
parents:
diff changeset
314 <option name="FOLDER_NAME" value="" />
weilong-guo
parents:
diff changeset
315 <option name="TEST_TYPE" value="TEST_SCRIPT" />
weilong-guo
parents:
diff changeset
316 <option name="PATTERN" value="" />
weilong-guo
parents:
diff changeset
317 <option name="USE_PATTERN" value="false" />
weilong-guo
parents:
diff changeset
318 <method />
weilong-guo
parents:
diff changeset
319 </configuration>
weilong-guo
parents:
diff changeset
320 <list size="1">
weilong-guo
parents:
diff changeset
321 <item index="0" class="java.lang.String" itemvalue="Python.output" />
weilong-guo
parents:
diff changeset
322 </list>
weilong-guo
parents:
diff changeset
323 <recent_temporary>
weilong-guo
parents:
diff changeset
324 <list size="1">
weilong-guo
parents:
diff changeset
325 <item index="0" class="java.lang.String" itemvalue="Python.output" />
weilong-guo
parents:
diff changeset
326 </list>
weilong-guo
parents:
diff changeset
327 </recent_temporary>
weilong-guo
parents:
diff changeset
328 </component>
weilong-guo
parents:
diff changeset
329 <component name="ShelveChangesManager" show_recycled="false" />
weilong-guo
parents:
diff changeset
330 <component name="SvnConfiguration" maxAnnotateRevisions="500" myUseAcceleration="nothing" myAutoUpdateAfterCommit="false" cleanupOnStartRun="false" SSL_PROTOCOLS="sslv3">
weilong-guo
parents:
diff changeset
331 <option name="USER" value="" />
weilong-guo
parents:
diff changeset
332 <option name="PASSWORD" value="" />
weilong-guo
parents:
diff changeset
333 <option name="mySSHConnectionTimeout" value="30000" />
weilong-guo
parents:
diff changeset
334 <option name="mySSHReadTimeout" value="30000" />
weilong-guo
parents:
diff changeset
335 <option name="LAST_MERGED_REVISION" />
weilong-guo
parents:
diff changeset
336 <option name="MERGE_DRY_RUN" value="false" />
weilong-guo
parents:
diff changeset
337 <option name="MERGE_DIFF_USE_ANCESTRY" value="true" />
weilong-guo
parents:
diff changeset
338 <option name="UPDATE_LOCK_ON_DEMAND" value="false" />
weilong-guo
parents:
diff changeset
339 <option name="IGNORE_SPACES_IN_MERGE" value="false" />
weilong-guo
parents:
diff changeset
340 <option name="CHECK_NESTED_FOR_QUICK_MERGE" value="false" />
weilong-guo
parents:
diff changeset
341 <option name="IGNORE_SPACES_IN_ANNOTATE" value="true" />
weilong-guo
parents:
diff changeset
342 <option name="SHOW_MERGE_SOURCES_IN_ANNOTATE" value="true" />
weilong-guo
parents:
diff changeset
343 <option name="FORCE_UPDATE" value="false" />
weilong-guo
parents:
diff changeset
344 <option name="IGNORE_EXTERNALS" value="false" />
weilong-guo
parents:
diff changeset
345 <myIsUseDefaultProxy>false</myIsUseDefaultProxy>
weilong-guo
parents:
diff changeset
346 </component>
weilong-guo
parents:
diff changeset
347 <component name="TaskManager">
weilong-guo
parents:
diff changeset
348 <task active="true" id="Default" summary="Default task">
weilong-guo
parents:
diff changeset
349 <changelist id="172bd281-b8c2-4544-b510-26029a6498b7" name="Default" comment="" />
weilong-guo
parents:
diff changeset
350 <created>1365490852338</created>
weilong-guo
parents:
diff changeset
351 <updated>1365490852338</updated>
weilong-guo
parents:
diff changeset
352 </task>
weilong-guo
parents:
diff changeset
353 <task id="LOCAL-00001" summary="update by Weilong">
weilong-guo
parents:
diff changeset
354 <created>1365495166132</created>
weilong-guo
parents:
diff changeset
355 <updated>1365495166132</updated>
weilong-guo
parents:
diff changeset
356 </task>
weilong-guo
parents:
diff changeset
357 <task id="LOCAL-00002" summary="Add version track;&#10;Accelerate alignment;&#10;Revised RRBS part.">
weilong-guo
parents:
diff changeset
358 <created>1366217039909</created>
weilong-guo
parents:
diff changeset
359 <updated>1366217039909</updated>
weilong-guo
parents:
diff changeset
360 </task>
weilong-guo
parents:
diff changeset
361 <task id="LOCAL-00003" summary="RRBS un-directional&#10;RRBS different digest enzyme">
weilong-guo
parents:
diff changeset
362 <created>1366521472272</created>
weilong-guo
parents:
diff changeset
363 <updated>1366521472272</updated>
weilong-guo
parents:
diff changeset
364 </task>
weilong-guo
parents:
diff changeset
365 <task id="LOCAL-00004" summary="Multiple-sites updates">
weilong-guo
parents:
diff changeset
366 <created>1368857624039</created>
weilong-guo
parents:
diff changeset
367 <updated>1368857624039</updated>
weilong-guo
parents:
diff changeset
368 </task>
weilong-guo
parents:
diff changeset
369 <task id="LOCAL-00005" summary="Clean-up/Galaxy/Test_data">
weilong-guo
parents:
diff changeset
370 <created>1368872343967</created>
weilong-guo
parents:
diff changeset
371 <updated>1368872343967</updated>
weilong-guo
parents:
diff changeset
372 </task>
weilong-guo
parents:
diff changeset
373 <task id="LOCAL-00006" summary="Clean-up/galaxy/test_data">
weilong-guo
parents:
diff changeset
374 <created>1368872394831</created>
weilong-guo
parents:
diff changeset
375 <updated>1368872394831</updated>
weilong-guo
parents:
diff changeset
376 </task>
weilong-guo
parents:
diff changeset
377 <task id="LOCAL-00007" summary="Fix bug on utils.py; Increased version; Add UPDATE">
weilong-guo
parents:
diff changeset
378 <created>1369030443105</created>
weilong-guo
parents:
diff changeset
379 <updated>1369030443105</updated>
weilong-guo
parents:
diff changeset
380 </task>
weilong-guo
parents:
diff changeset
381 <task id="LOCAL-00008" summary="support diff indexes">
weilong-guo
parents:
diff changeset
382 <created>1369355034039</created>
weilong-guo
parents:
diff changeset
383 <updated>1369355034040</updated>
weilong-guo
parents:
diff changeset
384 </task>
weilong-guo
parents:
diff changeset
385 <task id="LOCAL-00009" summary="Update Readme">
weilong-guo
parents:
diff changeset
386 <created>1369785459146</created>
weilong-guo
parents:
diff changeset
387 <updated>1369785459146</updated>
weilong-guo
parents:
diff changeset
388 </task>
weilong-guo
parents:
diff changeset
389 <task id="LOCAL-00010" summary="fix bug in galaxy; chmod +x *.py">
weilong-guo
parents:
diff changeset
390 <created>1369876356622</created>
weilong-guo
parents:
diff changeset
391 <updated>1369876356622</updated>
weilong-guo
parents:
diff changeset
392 </task>
weilong-guo
parents:
diff changeset
393 <task id="LOCAL-00011" summary="fix galaxy xml">
weilong-guo
parents:
diff changeset
394 <created>1370044685987</created>
weilong-guo
parents:
diff changeset
395 <updated>1370044685987</updated>
weilong-guo
parents:
diff changeset
396 </task>
weilong-guo
parents:
diff changeset
397 <task id="LOCAL-00012" summary="fix bugs for RRBS tag">
weilong-guo
parents:
diff changeset
398 <created>1371202921858</created>
weilong-guo
parents:
diff changeset
399 <updated>1371202921858</updated>
weilong-guo
parents:
diff changeset
400 </task>
weilong-guo
parents:
diff changeset
401 <task id="LOCAL-00013" summary="fix bugs for RRBS tag">
weilong-guo
parents:
diff changeset
402 <created>1371366774531</created>
weilong-guo
parents:
diff changeset
403 <updated>1371366774531</updated>
weilong-guo
parents:
diff changeset
404 </task>
weilong-guo
parents:
diff changeset
405 <task id="LOCAL-00014" summary="fix a bug">
weilong-guo
parents:
diff changeset
406 <created>1375307754641</created>
weilong-guo
parents:
diff changeset
407 <updated>1375307754641</updated>
weilong-guo
parents:
diff changeset
408 </task>
weilong-guo
parents:
diff changeset
409 <task id="LOCAL-00015" summary="V2.0.5">
weilong-guo
parents:
diff changeset
410 <created>1383633777408</created>
weilong-guo
parents:
diff changeset
411 <updated>1383633777408</updated>
weilong-guo
parents:
diff changeset
412 </task>
weilong-guo
parents:
diff changeset
413 <option name="localTasksCounter" value="16" />
weilong-guo
parents:
diff changeset
414 <servers />
weilong-guo
parents:
diff changeset
415 </component>
weilong-guo
parents:
diff changeset
416 <component name="TodoView" selected-index="0">
weilong-guo
parents:
diff changeset
417 <todo-panel id="selected-file">
weilong-guo
parents:
diff changeset
418 <are-packages-shown value="false" />
weilong-guo
parents:
diff changeset
419 <are-modules-shown value="false" />
weilong-guo
parents:
diff changeset
420 <flatten-packages value="false" />
weilong-guo
parents:
diff changeset
421 <is-autoscroll-to-source value="false" />
weilong-guo
parents:
diff changeset
422 </todo-panel>
weilong-guo
parents:
diff changeset
423 <todo-panel id="all">
weilong-guo
parents:
diff changeset
424 <are-packages-shown value="false" />
weilong-guo
parents:
diff changeset
425 <are-modules-shown value="false" />
weilong-guo
parents:
diff changeset
426 <flatten-packages value="false" />
weilong-guo
parents:
diff changeset
427 <is-autoscroll-to-source value="false" />
weilong-guo
parents:
diff changeset
428 </todo-panel>
weilong-guo
parents:
diff changeset
429 <todo-panel id="default-changelist">
weilong-guo
parents:
diff changeset
430 <are-packages-shown value="false" />
weilong-guo
parents:
diff changeset
431 <are-modules-shown value="false" />
weilong-guo
parents:
diff changeset
432 <flatten-packages value="false" />
weilong-guo
parents:
diff changeset
433 <is-autoscroll-to-source value="false" />
weilong-guo
parents:
diff changeset
434 </todo-panel>
weilong-guo
parents:
diff changeset
435 </component>
weilong-guo
parents:
diff changeset
436 <component name="ToolWindowManager">
weilong-guo
parents:
diff changeset
437 <frame x="53" y="22" width="1226" height="778" extended-state="0" />
weilong-guo
parents:
diff changeset
438 <editor active="true" />
weilong-guo
parents:
diff changeset
439 <layout>
weilong-guo
parents:
diff changeset
440 <window_info id="Messages" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
441 <window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32970452" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
442 <window_info id="TODO" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32980332" sideWeight="0.5" order="6" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
443 <window_info id="Database" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
444 <window_info id="Structure" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.24978974" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
445 <window_info id="Project" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" weight="0.25211507" sideWeight="0.6718507" order="0" side_tool="false" content_ui="combo" />
weilong-guo
parents:
diff changeset
446 <window_info id="Debug" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
447 <window_info id="Favorites" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32968882" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
448 <window_info id="Event Log" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32980332" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
449 <window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
450 <window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
451 <window_info id="Cvs" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="4" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
452 <window_info id="Message" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
453 <window_info id="Ant Build" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
454 <window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32829046" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
455 <window_info id="Commander" active="false" anchor="right" auto_hide="false" internal_type="SLIDING" type="SLIDING" visible="false" weight="0.4" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
456 <window_info id="Hierarchy" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="2" side_tool="false" content_ui="combo" />
weilong-guo
parents:
diff changeset
457 <window_info id="Inspection" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="5" side_tool="false" content_ui="tabs" />
weilong-guo
parents:
diff changeset
458 </layout>
weilong-guo
parents:
diff changeset
459 </component>
weilong-guo
parents:
diff changeset
460 <component name="VcsContentAnnotationSettings">
weilong-guo
parents:
diff changeset
461 <option name="myLimit" value="2678400000" />
weilong-guo
parents:
diff changeset
462 </component>
weilong-guo
parents:
diff changeset
463 <component name="VcsManagerConfiguration">
weilong-guo
parents:
diff changeset
464 <option name="OFFER_MOVE_TO_ANOTHER_CHANGELIST_ON_PARTIAL_COMMIT" value="true" />
weilong-guo
parents:
diff changeset
465 <option name="CHECK_CODE_SMELLS_BEFORE_PROJECT_COMMIT" value="false" />
weilong-guo
parents:
diff changeset
466 <option name="CHECK_NEW_TODO" value="true" />
weilong-guo
parents:
diff changeset
467 <option name="myTodoPanelSettings">
weilong-guo
parents:
diff changeset
468 <value>
weilong-guo
parents:
diff changeset
469 <are-packages-shown value="false" />
weilong-guo
parents:
diff changeset
470 <are-modules-shown value="false" />
weilong-guo
parents:
diff changeset
471 <flatten-packages value="false" />
weilong-guo
parents:
diff changeset
472 <is-autoscroll-to-source value="false" />
weilong-guo
parents:
diff changeset
473 </value>
weilong-guo
parents:
diff changeset
474 </option>
weilong-guo
parents:
diff changeset
475 <option name="PERFORM_UPDATE_IN_BACKGROUND" value="true" />
weilong-guo
parents:
diff changeset
476 <option name="PERFORM_COMMIT_IN_BACKGROUND" value="true" />
weilong-guo
parents:
diff changeset
477 <option name="PERFORM_EDIT_IN_BACKGROUND" value="true" />
weilong-guo
parents:
diff changeset
478 <option name="PERFORM_CHECKOUT_IN_BACKGROUND" value="true" />
weilong-guo
parents:
diff changeset
479 <option name="PERFORM_ADD_REMOVE_IN_BACKGROUND" value="true" />
weilong-guo
parents:
diff changeset
480 <option name="PERFORM_ROLLBACK_IN_BACKGROUND" value="false" />
weilong-guo
parents:
diff changeset
481 <option name="CHECK_LOCALLY_CHANGED_CONFLICTS_IN_BACKGROUND" value="false" />
weilong-guo
parents:
diff changeset
482 <option name="CHANGED_ON_SERVER_INTERVAL" value="60" />
weilong-guo
parents:
diff changeset
483 <option name="SHOW_ONLY_CHANGED_IN_SELECTION_DIFF" value="true" />
weilong-guo
parents:
diff changeset
484 <option name="CHECK_COMMIT_MESSAGE_SPELLING" value="true" />
weilong-guo
parents:
diff changeset
485 <option name="DEFAULT_PATCH_EXTENSION" value="patch" />
weilong-guo
parents:
diff changeset
486 <option name="SHORT_DIFF_HORIZONTALLY" value="true" />
weilong-guo
parents:
diff changeset
487 <option name="SHORT_DIFF_EXTRA_LINES" value="2" />
weilong-guo
parents:
diff changeset
488 <option name="SOFT_WRAPS_IN_SHORT_DIFF" value="true" />
weilong-guo
parents:
diff changeset
489 <option name="INCLUDE_TEXT_INTO_PATCH" value="false" />
weilong-guo
parents:
diff changeset
490 <option name="INCLUDE_TEXT_INTO_SHELF" value="false" />
weilong-guo
parents:
diff changeset
491 <option name="SHOW_FILE_HISTORY_DETAILS" value="true" />
weilong-guo
parents:
diff changeset
492 <option name="SHOW_VCS_ERROR_NOTIFICATIONS" value="true" />
weilong-guo
parents:
diff changeset
493 <option name="SHOW_DIRTY_RECURSIVELY" value="false" />
weilong-guo
parents:
diff changeset
494 <option name="LIMIT_HISTORY" value="true" />
weilong-guo
parents:
diff changeset
495 <option name="MAXIMUM_HISTORY_ROWS" value="1000" />
weilong-guo
parents:
diff changeset
496 <option name="UPDATE_FILTER_SCOPE_NAME" />
weilong-guo
parents:
diff changeset
497 <option name="USE_COMMIT_MESSAGE_MARGIN" value="false" />
weilong-guo
parents:
diff changeset
498 <option name="COMMIT_MESSAGE_MARGIN_SIZE" value="72" />
weilong-guo
parents:
diff changeset
499 <option name="WRAP_WHEN_TYPING_REACHES_RIGHT_MARGIN" value="false" />
weilong-guo
parents:
diff changeset
500 <option name="FORCE_NON_EMPTY_COMMENT" value="false" />
weilong-guo
parents:
diff changeset
501 <option name="CLEAR_INITIAL_COMMIT_MESSAGE" value="false" />
weilong-guo
parents:
diff changeset
502 <option name="LAST_COMMIT_MESSAGE" value="V2.0.5" />
weilong-guo
parents:
diff changeset
503 <option name="MAKE_NEW_CHANGELIST_ACTIVE" value="false" />
weilong-guo
parents:
diff changeset
504 <option name="OPTIMIZE_IMPORTS_BEFORE_PROJECT_COMMIT" value="false" />
weilong-guo
parents:
diff changeset
505 <option name="CHECK_FILES_UP_TO_DATE_BEFORE_COMMIT" value="false" />
weilong-guo
parents:
diff changeset
506 <option name="REFORMAT_BEFORE_PROJECT_COMMIT" value="false" />
weilong-guo
parents:
diff changeset
507 <option name="REFORMAT_BEFORE_FILE_COMMIT" value="false" />
weilong-guo
parents:
diff changeset
508 <option name="FILE_HISTORY_DIALOG_COMMENTS_SPLITTER_PROPORTION" value="0.8" />
weilong-guo
parents:
diff changeset
509 <option name="FILE_HISTORY_DIALOG_SPLITTER_PROPORTION" value="0.5" />
weilong-guo
parents:
diff changeset
510 <option name="ACTIVE_VCS_NAME" />
weilong-guo
parents:
diff changeset
511 <option name="UPDATE_GROUP_BY_PACKAGES" value="false" />
weilong-guo
parents:
diff changeset
512 <option name="UPDATE_GROUP_BY_CHANGELIST" value="false" />
weilong-guo
parents:
diff changeset
513 <option name="UPDATE_FILTER_BY_SCOPE" value="false" />
weilong-guo
parents:
diff changeset
514 <option name="SHOW_FILE_HISTORY_AS_TREE" value="false" />
weilong-guo
parents:
diff changeset
515 <option name="FILE_HISTORY_SPLITTER_PROPORTION" value="0.6" />
weilong-guo
parents:
diff changeset
516 <MESSAGE value="update by Weilong" />
weilong-guo
parents:
diff changeset
517 <MESSAGE value="Add version track;&#10;Accelerate alignment;&#10;Revised RRBS part." />
weilong-guo
parents:
diff changeset
518 <MESSAGE value="RRBS un-directional&#10;RRBS different digest enzyme" />
weilong-guo
parents:
diff changeset
519 <MESSAGE value="Multiple-sites updates" />
weilong-guo
parents:
diff changeset
520 <MESSAGE value="Clean-up/Galaxy/Test_data" />
weilong-guo
parents:
diff changeset
521 <MESSAGE value="Clean-up/galaxy/test_data" />
weilong-guo
parents:
diff changeset
522 <MESSAGE value="Fix bug on utils.py; Increased version; Add UPDATE" />
weilong-guo
parents:
diff changeset
523 <MESSAGE value="support diff indexes" />
weilong-guo
parents:
diff changeset
524 <MESSAGE value="Update Readme" />
weilong-guo
parents:
diff changeset
525 <MESSAGE value="fix bug in galaxy; chmod +x *.py" />
weilong-guo
parents:
diff changeset
526 <MESSAGE value="Bug fixed in Galaxy.xml" />
weilong-guo
parents:
diff changeset
527 <MESSAGE value="fix galaxy xml" />
weilong-guo
parents:
diff changeset
528 <MESSAGE value="fix bugs for RRBS tag" />
weilong-guo
parents:
diff changeset
529 <MESSAGE value="fix a bug" />
weilong-guo
parents:
diff changeset
530 <MESSAGE value="V2.0.5" />
weilong-guo
parents:
diff changeset
531 </component>
weilong-guo
parents:
diff changeset
532 <component name="XDebuggerManager">
weilong-guo
parents:
diff changeset
533 <breakpoint-manager>
weilong-guo
parents:
diff changeset
534 <option name="time" value="23" />
weilong-guo
parents:
diff changeset
535 </breakpoint-manager>
weilong-guo
parents:
diff changeset
536 </component>
weilong-guo
parents:
diff changeset
537 <component name="editorHistoryManager">
weilong-guo
parents:
diff changeset
538 <entry file="file://$PROJECT_DIR$/FilterReads.py">
weilong-guo
parents:
diff changeset
539 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
540 <state line="234" column="14" selection-start="6889" selection-end="6889" vertical-scroll-proportion="0.7379768" />
weilong-guo
parents:
diff changeset
541 </provider>
weilong-guo
parents:
diff changeset
542 </entry>
weilong-guo
parents:
diff changeset
543 <entry file="file://$PROJECT_DIR$/galaxy/bs_seeker2_wrapper.py">
weilong-guo
parents:
diff changeset
544 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
545 <state line="116" column="0" selection-start="4938" selection-end="4938" vertical-scroll-proportion="1.3648424" />
weilong-guo
parents:
diff changeset
546 </provider>
weilong-guo
parents:
diff changeset
547 </entry>
weilong-guo
parents:
diff changeset
548 <entry file="file://$PROJECT_DIR$/galaxy/bs_seeker2_wrapper.xml">
weilong-guo
parents:
diff changeset
549 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
550 <state line="2" column="40" selection-start="188" selection-end="188" vertical-scroll-proportion="-0.5970149" />
weilong-guo
parents:
diff changeset
551 </provider>
weilong-guo
parents:
diff changeset
552 </entry>
weilong-guo
parents:
diff changeset
553 <entry file="file://$PROJECT_DIR$/bs_align/output.py">
weilong-guo
parents:
diff changeset
554 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
555 <state line="53" column="25" selection-start="2172" selection-end="2172" vertical-scroll-proportion="0.9339775" />
weilong-guo
parents:
diff changeset
556 </provider>
weilong-guo
parents:
diff changeset
557 </entry>
weilong-guo
parents:
diff changeset
558 <entry file="file://$PROJECT_DIR$/bs_align/bs_align_utils.py">
weilong-guo
parents:
diff changeset
559 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
560 <state line="390" column="21" selection-start="12695" selection-end="12695" vertical-scroll-proportion="0.59731543" />
weilong-guo
parents:
diff changeset
561 </provider>
weilong-guo
parents:
diff changeset
562 </entry>
weilong-guo
parents:
diff changeset
563 <entry file="file:///System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/fileinput.py">
weilong-guo
parents:
diff changeset
564 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
565 <state line="90" column="4" selection-start="3827" selection-end="3827" vertical-scroll-proportion="0.28391168" />
weilong-guo
parents:
diff changeset
566 </provider>
weilong-guo
parents:
diff changeset
567 </entry>
weilong-guo
parents:
diff changeset
568 <entry file="file://$PROJECT_DIR$/bs_index/wg_build.py">
weilong-guo
parents:
diff changeset
569 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
570 <state line="7" column="37" selection-start="268" selection-end="268" vertical-scroll-proportion="-0.70347005">
weilong-guo
parents:
diff changeset
571 <folding />
weilong-guo
parents:
diff changeset
572 </state>
weilong-guo
parents:
diff changeset
573 </provider>
weilong-guo
parents:
diff changeset
574 </entry>
weilong-guo
parents:
diff changeset
575 <entry file="file://$PROJECT_DIR$/bs_seeker2-build.py">
weilong-guo
parents:
diff changeset
576 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
577 <state line="15" column="102" selection-start="651" selection-end="651" vertical-scroll-proportion="0.19323671">
weilong-guo
parents:
diff changeset
578 <folding />
weilong-guo
parents:
diff changeset
579 </state>
weilong-guo
parents:
diff changeset
580 </provider>
weilong-guo
parents:
diff changeset
581 </entry>
weilong-guo
parents:
diff changeset
582 <entry file="file://$PROJECT_DIR$/bs_align/bs_single_end.py">
weilong-guo
parents:
diff changeset
583 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
584 <state line="73" column="19" selection-start="2782" selection-end="2789" vertical-scroll-proportion="0.9328859">
weilong-guo
parents:
diff changeset
585 <folding>
weilong-guo
parents:
diff changeset
586 <element signature="e#0#40#0" expanded="true" />
weilong-guo
parents:
diff changeset
587 </folding>
weilong-guo
parents:
diff changeset
588 </state>
weilong-guo
parents:
diff changeset
589 </provider>
weilong-guo
parents:
diff changeset
590 </entry>
weilong-guo
parents:
diff changeset
591 <entry file="file://$PROJECT_DIR$/bs_align/bs_rrbs.py">
weilong-guo
parents:
diff changeset
592 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
593 <state line="621" column="50" selection-start="27893" selection-end="27908" vertical-scroll-proportion="0.33221477">
weilong-guo
parents:
diff changeset
594 <folding />
weilong-guo
parents:
diff changeset
595 </state>
weilong-guo
parents:
diff changeset
596 </provider>
weilong-guo
parents:
diff changeset
597 </entry>
weilong-guo
parents:
diff changeset
598 <entry file="file://$PROJECT_DIR$/bs_align/bs_pair_end.py">
weilong-guo
parents:
diff changeset
599 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
600 <state line="734" column="76" selection-start="31798" selection-end="31798" vertical-scroll-proportion="20.067114">
weilong-guo
parents:
diff changeset
601 <folding />
weilong-guo
parents:
diff changeset
602 </state>
weilong-guo
parents:
diff changeset
603 </provider>
weilong-guo
parents:
diff changeset
604 </entry>
weilong-guo
parents:
diff changeset
605 <entry file="file://$PROJECT_DIR$/RELEASE_NOTES">
weilong-guo
parents:
diff changeset
606 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
607 <state line="23" column="0" selection-start="1006" selection-end="1006" vertical-scroll-proportion="0.6845426">
weilong-guo
parents:
diff changeset
608 <folding />
weilong-guo
parents:
diff changeset
609 </state>
weilong-guo
parents:
diff changeset
610 </provider>
weilong-guo
parents:
diff changeset
611 </entry>
weilong-guo
parents:
diff changeset
612 <entry file="file://$PROJECT_DIR$/bs_seeker2-call_methylation.py">
weilong-guo
parents:
diff changeset
613 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
614 <state line="135" column="30" selection-start="5381" selection-end="5404" vertical-scroll-proportion="-1.1900162">
weilong-guo
parents:
diff changeset
615 <folding>
weilong-guo
parents:
diff changeset
616 <element signature="e#23#69#0" expanded="true" />
weilong-guo
parents:
diff changeset
617 </folding>
weilong-guo
parents:
diff changeset
618 </state>
weilong-guo
parents:
diff changeset
619 </provider>
weilong-guo
parents:
diff changeset
620 </entry>
weilong-guo
parents:
diff changeset
621 <entry file="file://$PROJECT_DIR$/bs_seeker2-align.py">
weilong-guo
parents:
diff changeset
622 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
623 <state line="57" column="122" selection-start="5501" selection-end="5501" vertical-scroll-proportion="0.7085346">
weilong-guo
parents:
diff changeset
624 <folding />
weilong-guo
parents:
diff changeset
625 </state>
weilong-guo
parents:
diff changeset
626 </provider>
weilong-guo
parents:
diff changeset
627 </entry>
weilong-guo
parents:
diff changeset
628 <entry file="file://$PROJECT_DIR$/README.md">
weilong-guo
parents:
diff changeset
629 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
630 <state line="77" column="25" selection-start="2888" selection-end="2895" vertical-scroll-proportion="-7.92">
weilong-guo
parents:
diff changeset
631 <folding />
weilong-guo
parents:
diff changeset
632 </state>
weilong-guo
parents:
diff changeset
633 </provider>
weilong-guo
parents:
diff changeset
634 </entry>
weilong-guo
parents:
diff changeset
635 <entry file="file://$PROJECT_DIR$/bs_utils/utils.py">
weilong-guo
parents:
diff changeset
636 <provider selected="true" editor-type-id="text-editor">
weilong-guo
parents:
diff changeset
637 <state line="14" column="0" selection-start="176" selection-end="176" vertical-scroll-proportion="0.16103059">
weilong-guo
parents:
diff changeset
638 <folding />
weilong-guo
parents:
diff changeset
639 </state>
weilong-guo
parents:
diff changeset
640 </provider>
weilong-guo
parents:
diff changeset
641 </entry>
weilong-guo
parents:
diff changeset
642 </component>
weilong-guo
parents:
diff changeset
643 </project>
weilong-guo
parents:
diff changeset
644