Mercurial > repos > weilong-guo > bs_seeker2
diff BSseeker2/RELEASE_NOTES @ 1:8b26adf64adc draft default tip
V2.0.5
author | weilong-guo |
---|---|
date | Tue, 05 Nov 2013 01:55:39 -0500 |
parents | e6df770c0e58 |
children |
line wrap: on
line diff
--- a/BSseeker2/RELEASE_NOTES Fri Jul 12 18:47:28 2013 -0400 +++ b/BSseeker2/RELEASE_NOTES Tue Nov 05 01:55:39 2013 -0500 @@ -3,5 +3,25 @@ 1. Fix bug in utils.py 2. Add UPDATE file +v2.0.4 - July 29, 2013 +1. Update README.md (Definition of ATCGmap format) +2. Fix the "None" output when no parameter +3. Fix error report when using wrong path for short reads aligner +4. MIT License + +V2.0.5 - Nov 31, 2013 +1. Fix bug in "bs_single_end.py" for "numbers_premapped_lst[0] += len(Unique_FW_C2T)" +2. Make the default aligner to Bowtie +3. Update the README file +4. "-r N" in call-methylation will only control Wiggle file +5. Change the output of pair-end mapping to the standard format of SAM file (the QNAME and FLAG fields) +6. The artificially synthesized bases at the ends of RRBS fragments are removed when removing the adapters +7. Add the total number of bases of uniquely mapped reads to the STDOUT +8. Support "end-to-end" alignment mode in the Galaxy version +9. Support input file in both TEXT or Compressed (.gz) format +10. "-m" allow both INT and FLOAT as input. Ex: '-m 5' or '-m 0.05' +11. Add mode information in output + +