Mercurial > repos > wolma > mimodd

comparison tool_dependencies.xml @ 22:24154c580718 draft

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Uploaded
author wolma
date Sun, 12 Jun 2016 07:39:46 -0400
parents c46406466625
children 5db0545b9004
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21:c46406466625 22:24154c580718
75 <!-- run MiModD's __first_run__ module once to give the package a chance to configure itself --> 75 <!-- run MiModD's __first_run__ module once to give the package a chance to configure itself -->
76 <action type="shell_command">$INSTALL_DIR/MiModD_venv/bin/python3 -m MiModD.__first_run__</action> 76 <action type="shell_command">$INSTALL_DIR/MiModD_venv/bin/python3 -m MiModD.__first_run__</action>
77 77
78 <!-- configure environment --> 78 <!-- configure environment -->
79 <action type="set_environment"> 79 <action type="set_environment">
80 <!-- since the iuc R package does not export the path to R's libR.so,
81 any venv using rpy2, needs to record this path -->
82 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[R_HOME]/lib</environment_variable>
80 <!-- to make MiModD accessible it is sufficient to simply add the 83 <!-- to make MiModD accessible it is sufficient to simply add the
81 venvs site-packages directory to PYTHONPATH; 84 venvs site-packages directory to PYTHONPATH;
82 SITE_PACKAGES_RELPATH will be made available by the python3 85 SITE_PACKAGES_RELPATH will be made available by the python3
83 package, which all MiModD toolwrappers require --> 86 package, which all MiModD toolwrappers require -->
84 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/MiModD_venv/$SITE_PACKAGES_RELPATH</environment_variable> 87 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/MiModD_venv/$SITE_PACKAGES_RELPATH</environment_variable>