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comparison deletion_predictor.xml @ 2:72d20758ba2c

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final upload
author wolma
date Wed, 11 Feb 2015 09:23:43 -0500
parents a548b3c6ed00
children ffee8534a5c4
comparison
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1:a548b3c6ed00 2:72d20758ba2c
1 <tool id="deletion_prediction" name="Deletion Prediction for paired-end data"> 1 <tool id="deletion_prediction" name="Deletion Prediction for paired-end data">
2 <description>Predicts deletions in one or more aligned read samples based on coverage of the reference genome and on insert sizes</description> 2 <description>Predicts deletions in one or more aligned read samples based on coverage of the reference genome and on insert sizes</description>
3 <requirements> 3 <macros>
4 <requirement type="package">mimodd</requirement> 4 <import>toolshed_macros.xml</import>
5 </requirements> 5 </macros>
6 <expand macro="requirements"/>
6 <version_command>mimodd version -q</version_command> 7 <version_command>mimodd version -q</version_command>
7 <command> 8 <command>
8 mimodd delcall 9 mimodd delcall
9 #for $l in $list_input 10 #for $l in $list_input
10 "${l.bamfile}" 11 "${l.bamfile}"