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comparison reheader.xml @ 2:72d20758ba2c

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final upload
author wolma
date Wed, 11 Feb 2015 09:23:43 -0500
parents a548b3c6ed00
children ba685c655e18
comparison
equal deleted inserted replaced
1:a548b3c6ed00 2:72d20758ba2c
1 <tool id="reheader" name="Reheader BAM file"> 1 <tool id="reheader" name="Reheader BAM file">
2 2
3 <description>From a BAM file generate a new file with the original header (if any) replaced or modified by that found in a second SAM file</description> 3 <description>From a BAM file generate a new file with the original header (if any) replaced or modified by that found in a second SAM file</description>
4 <requirements> 4 <macros>
5 <requirement type="package">mimodd</requirement> 5 <import>toolshed_macros.xml</import>
6 </requirements> 6 </macros>
7 <expand macro="requirements"/>
7 <version_command>mimodd version -q</version_command> 8 <version_command>mimodd version -q</version_command>
8 <command> 9 <command>
9 #if ($str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form") or $str($co.treat_co) != "ignore": 10 #if ($str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form") or $str($co.treat_co) != "ignore":
10 mimodd header 11 mimodd header
11 #if $str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form": 12 #if $str($rg.treat_rg) != "ignore" and $str($rg.rginfo.source) == "from_form":