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comparison covstats.xml @ 21:c46406466625 draft

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Uploaded
author wolma
date Sat, 11 Jun 2016 19:10:44 -0400
parents 93db2f9bca12
children 5db0545b9004
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20:aba6d9b1c1f1 21:c46406466625
2 <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description> 2 <description>Calculate coverage statistics for a BCF file as generated by the Variant Calling tool</description>
3 <macros> 3 <macros>
4 <import>toolshed_macros.xml</import> 4 <import>toolshed_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <version_command>mimodd version -q</version_command> 7 <version_command>python3 -m MiModD version -q</version_command>
8 <command> 8 <command>
9 mimodd covstats "$ifile" --ofile "$output_vcf" 9 python3 -m MiModD covstats "$ifile" --ofile "$output_vcf"
10 </command> 10 </command>
11 11
12 <inputs> 12 <inputs>
13 <param name="ifile" type="data" format="bcf" label="BCF input file" help="Use the Variant Calling tool to generate input for this tool."/> 13 <param name="ifile" type="data" format="bcf" label="BCF input file" help="Use the Variant Calling tool to generate input for this tool."/>
14 </inputs> 14 </inputs>