Mercurial > repos > wolma > mimodd

comparison tool_dependencies.xml @ 16:e676aa6997cc draft

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Uploaded
author wolma
date Mon, 25 Apr 2016 18:00:02 -0400
parents 92bd325c70da
children b658c34ee3fd
comparison
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15:92bd325c70da 16:e676aa6997cc
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="zlib" version="1.2.8"> 3 <package name="zlib" version="1.2.8">
4 <repository changeset_revision="dce22a65bac2" name="package_zlib_1_2_8" owner="wolma" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="R" version="3.2.1"> 6 <package name="R" version="3.2.1">
7 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
8 </package> 8 </package>
9 <package name="readline" version="6.3"> 9 <package name="readline" version="6.3">
32 <action sha256sum="0d88f7fff21fbef523c8678ed8f850a36052edca4ce702c62f234fdcb52de441" type="download_by_url"> 32 <action sha256sum="0d88f7fff21fbef523c8678ed8f850a36052edca4ce702c62f234fdcb52de441" type="download_by_url">
33 https://depot.galaxyproject.org/software/rpy2/rpy2_2.7.5_src_all.tar.gz 33 https://depot.galaxyproject.org/software/rpy2/rpy2_2.7.5_src_all.tar.gz
34 </action> 34 </action>
35 <action type="set_environment_for_install"> 35 <action type="set_environment_for_install">
36 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 36 <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
37 <package name="readline" version="6.2" /> 37 <package name="readline" version="6.3" />
38 </repository> 38 </repository>
39 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> 39 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
40 <package name="R" version="3.2.1" /> 40 <package name="R" version="3.2.1" />
41 </repository> 41 </repository>
42 </action> 42 </action>
48 <action type="change_directory">$TMP_WORK_DIR</action> 48 <action type="change_directory">$TMP_WORK_DIR</action>
49 49
50 <!-- download and install MiModD --> 50 <!-- download and install MiModD -->
51 <action type="download_by_url">http://sourceforge.net/projects/mimodd/files/MiModD-0.1.7.2.tar.gz</action> 51 <action type="download_by_url">http://sourceforge.net/projects/mimodd/files/MiModD-0.1.7.2.tar.gz</action>
52 <action type="set_environment_for_install"> 52 <action type="set_environment_for_install">
53 <repository changeset_revision="dce22a65bac2" name="package_zlib_1_2_8" owner="wolma" toolshed="https://toolshed.g2.bx.psu.edu"> 53 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
54 <package name="zlib" version="1.2.8" /> 54 <package name="zlib" version="1.2.8" />
55 </repository> 55 </repository>
56 </action> 56 </action>
57 <!-- install MiModD placing the entry script mimodd into the venv's bin directory --> 57 <!-- install MiModD placing the entry script mimodd into the venv's bin directory -->
58 <action type="shell_command">python3 setup.py install</action> 58 <action type="shell_command">python3 setup.py install</action>