Mercurial > repos > wolma > mimodd
diff fileinfo.xml @ 0:6231ae8f87b8
Uploaded
author | wolma |
---|---|
date | Wed, 11 Feb 2015 08:29:02 -0500 |
parents | |
children | a548b3c6ed00 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fileinfo.xml Wed Feb 11 08:29:02 2015 -0500 @@ -0,0 +1,34 @@ +<tool id="fileinfo" name="Retrieve File Information"> + <description>for supported data formats.</description> + <version_command>mimodd version -q</version_command> + <command> + mimodd info "$ifile" -o "$outputfile" --verbose --oformat $oformat + </command> + + <inputs> + <param name="ifile" type="data" format="bam,sam,vcf,bcf,fasta" label="input file" /> + <param name="oformat" type="select" label="output format"> + <option value="txt">text</option> + <option value="html">html</option> + </param> + </inputs> + + <outputs> + <data name="outputfile" format="txt" label="Sample Info on ${on_string}"> + <change_format> + <when input="oformat" value="html" format="html"/> + </change_format> + </data> + </outputs> + +<help> +.. class:: infomark + + **What it does** + +The tool inspects the input file and generates a report summarizing its contents. + +It autodetects and works with most file formats produced by MiModD, i.e., **SAM / BAM, vcf / bcf and fasta**, and produces a standardized report for all of them. + +</help> +</tool>