Mercurial > repos > wolma > mimodd
diff reheader.xml @ 5:bdd1995c9e66
upgrade to mimodd version 0.1.6.1
| author | Wolfgang Maier |
|---|---|
| date | Tue, 28 Jul 2015 23:21:11 +0200 |
| parents | ba685c655e18 |
| children | 85214e4428fd |
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--- a/reheader.xml Thu Jun 04 17:52:04 2015 +0200 +++ b/reheader.xml Tue Jul 28 23:21:11 2015 +0200 @@ -1,5 +1,4 @@ -<tool id="reheader" name="Reheader BAM file"> - +<tool id="reheader" name="Reheader BAM file" version="0.1.6.1"> <description>From a BAM file generate a new file with the original header (if any) replaced or modified by that found in a second SAM file</description> <expand macro="requirements"/> <version_command>mimodd version -q</version_command> @@ -83,7 +82,7 @@ #set $restr = "" #for $rename in $rg_renaming - #set $restr = $restr + ($str($rename.from) and $str($rename.to) and '"' + $str($rename.from) + '" : "' + $str($rename.to) + '"') + #set $restr = $restr + ($str($rename.from) and $str($rename.to) and '"' + $str($rename.from) + '" : "' + $str($rename.to) + '" ') #end for #if $restr --rgm $restr @@ -91,7 +90,7 @@ #set $restr = "" #for $rename in $sq_renaming - #set $restr = $restr + ($str($rename.from) and $str($rename.to) and '"' + $str($rename.from) + '" : "' + $str($rename.to) + '"') + #set $restr = $restr + ($str($rename.from) and $str($rename.to) and '"' + $str($rename.from) + '" : "' + $str($rename.to) + '" ') #end for #if $restr --sqm $restr