Mercurial > repos > wolma > mimodd
diff tool_dependencies.xml @ 21:c46406466625 draft
Uploaded
author | wolma |
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date | Sat, 11 Jun 2016 19:10:44 -0400 |
parents | aba6d9b1c1f1 |
children | 24154c580718 |
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--- a/tool_dependencies.xml Fri Apr 29 06:01:46 2016 -0400 +++ b/tool_dependencies.xml Sat Jun 11 19:10:44 2016 -0400 @@ -4,13 +4,13 @@ <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="R" version="3.2.1"> - <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="readline" version="6.3"> <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="python3" version="3.4"> - <repository changeset_revision="5e5653b689ca" name="package_python_3_4_x_lean" owner="wolma" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="83407422ec16" name="package_python_3_4_x_lean" owner="wolma" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="mimodd" version="0.1.7.2"> @@ -18,7 +18,7 @@ <actions> <!-- prepare a python3 venv to install into --> <action type="set_environment_for_install"> - <repository changeset_revision="5e5653b689ca" name="package_python_3_4_x_lean" owner="wolma" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="83407422ec16" name="package_python_3_4_x_lean" owner="wolma" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="python3" version="3.4" /> </repository> </action> @@ -50,7 +50,7 @@ <repository changeset_revision="ca1a9400d4e1" name="package_readline_6_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="readline" version="6.3" /> </repository> - <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> <package name="R" version="3.2.1" /> </repository> </action> @@ -77,8 +77,11 @@ <!-- configure environment --> <action type="set_environment"> - <!-- make the mimodd entry script discoverable --> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/MiModD_venv/bin</environment_variable> + <!-- to make MiModD accessible it is sufficient to simply add the + venvs site-packages directory to PYTHONPATH; + SITE_PACKAGES_RELPATH will be made available by the python3 + package, which all MiModD toolwrappers require --> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/MiModD_venv/$SITE_PACKAGES_RELPATH</environment_variable> </action> </actions> </install>