Mercurial > repos > wolma > mimodd

view snpeff_genomes.xml @ 24:3accdbe6503b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Deleted selected files
author wolma
date Thu, 21 Jul 2016 03:56:19 -0400
parents 5db0545b9004
children
line wrap: on
line source

<tool id="snpeff_genomes" name="List Installed SnpEff Genomes" version="0.1.7.3">
  <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description>
  <macros>
    <import>toolshed_macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <version_command>python3 -m MiModD version -q</version_command>
  <command>
  	python3 -m MiModD snpeff-genomes -o "$outputfile"
  </command>
  <outputs>
    <data format="tabular" name="outputfile" />
  </outputs>
<help>
.. class:: infomark

**What it does**

When executed this tool searches the host machine's SnpEff installation for properly registered and installed
genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.

</help>

</tool>