# HG changeset patch # User wolma # Date 1461619645 14400 # Node ID f0b3871cb869f19841ad35afd32928501403e7c0 # Parent c2c70edb70eba837618e79cfc81ada372404e128 Uploaded diff -r c2c70edb70eb -r f0b3871cb869 mimodd --- a/mimodd Mon Apr 25 17:26:32 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2046 +0,0 @@ - - - - - - - - wm75 / mimodd — Bitbucket - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

- - - - - - - - - - - - - - - - - -

- -

- - -

- - - - -

- -

- - - - -

- Navigation -

- - -

- -

- - - - - -

- - - -

- -

- Wolfgang Maier -
- mimodd -

- -

Overview

- -

- - - -

- - - - - -

- -

- - - - - - -

- - Watch - - - - -

- - - - - -

- -

- - -

Last updated: - 19 seconds ago -
Language: - - XML - -
Access level: - - Admin - - -

- - 1 - - Branch - - -
- - 1 - - Tag - - -
- - 0 - - Forks - - -
- - - 1 - - Watcher - - -

- - - - - -

- - - -

- -

- There isn't a README yet -

- - - Create one and tell people where to start and how to contribute. - - -

- - -

- - Create a README - -

- -

- - - - -

- - Dismiss this banner - -

Invite users to this repo

- -

- - - -

- Recent activity - - - - -

- - -

- - - - -

- - -

- - - -

- - - 6378f70 - - -

- - Changeset 6378f70 approved in - - - wm75/mimodd - - - -

- -

- - - - - - Wolfgang Maier - - · - -

- - - - - -

- - -

- - - -

- - - - - 1 commit - - -

- - Pushed to - - - wm75/mimodd - - - -

- -

- - 6378f70 - - - full install including R and rpy2 for plotting - - -

- - -

- -

- - - - - - Wolfgang Maier - - · - -

- - - - - -

- - -

- - - -

- - - - - wm75/mimodd - - - -

- - Repository imported - -

- -

- - - - - - Wolfgang Maier - - · - -

- - -

- - - - - - - - - - - - - -

- -

- - -

- - - - - - - - - - - - - - - - -

- - - -

- -

- - - - - - - - - - -

- -

- - - - - - - - - - \ No newline at end of file diff -r c2c70edb70eb -r f0b3871cb869 tool_dependencies.xml --- a/tool_dependencies.xml Mon Apr 25 17:26:32 2016 -0400 +++ b/tool_dependencies.xml Mon Apr 25 17:27:25 2016 -0400 @@ -3,6 +3,12 @@ + + + + + + @@ -10,27 +16,50 @@ - http://sourceforge.net/projects/mimodd/files/MiModD-0.1.7.2.tar.gz + + python3 -m venv --without-pip $INSTALL_DIR/MiModD_venv + + rm $INSTALL_DIR/MiModD_venv/bin/python + . $INSTALL_DIR/MiModD_venv/bin/activate + + + + https://depot.galaxyproject.org/software/rpy2/rpy2_2.7.5_src_all.tar.gz + + + + + + + + + + + export LDFLAGS="-L$READLINE_LIB_PATH -lreadline" && + export CPPFLAGS="-I$READLINE_INCLUDE_PATH" && + python3 setup.py install + + $TMP_WORK_DIR + + + http://sourceforge.net/projects/mimodd/files/MiModD-0.1.7.2.tar.gz - pyvenv --without-pip $INSTALL_DIR/MiModD_venv - - rm $INSTALL_DIR/MiModD_venv/bin/python - $INSTALL_DIR/MiModD_venv/bin/python3 setup.py install + python3 setup.py install - chmod 755 $INSTALL_DIR/MiModD_venv/lib/python3.4/site-packages/MiModD/bin/* + $INSTALL_DIR/MiModD_venv/lib/python3.4/site-packages/MiModD/bin/* - $INSTALL_DIR/MiModD_venv/bin/python3 -m MiModD.__first_run__ + python3 -m MiModD.__first_run__ @@ -42,7 +71,6 @@ $ENV[LD_LIBRARY_PATH] -

- - - - mimodd -

Overview

- There isn't a README yet -

Invite users to this repo

- Recent activity - - - - -

Help