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view snpeff_genomes.xml @ 2:4054aed96ec0 draft

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author wolma
date Sat, 13 Dec 2014 18:56:13 -0500
parents dba25dfccb43
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<tool id="snpeff_genomes" name="List Installed SnpEff Genomes">
  <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description>
  <requirements>
    <requirement type="package" version="0.1.5">mimodd</requirement>
  </requirements>
  <version_command>mimodd version -q</version_command>
  <command>
  	mimodd snpeff-genomes -o $outputfile
  </command>
  <outputs>
    <data name="outputfile" format="tabular" />
  </outputs>
<help>
.. class:: infomark

**What it does**

When executed this tool searches the host machine's SnpEff installation for properly registered and installed
genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.

</help>

</tool>