# HG changeset patch
# User wolma
# Date 1418509176 18000
# Node ID dba25dfccb43d4c17ffcb878d6e3dbc8a4dbff2e

Imported from capsule None

diff -r 000000000000 -r dba25dfccb43 snpeff_genomes.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpeff_genomes.xml	Sat Dec 13 17:19:36 2014 -0500
@@ -0,0 +1,23 @@
+<tool id="snpeff_genomes" name="List Installed SnpEff Genomes">
+  <description>Checks the local SnpEff installation to compile a list of currently installed genomes</description>
+  <requirements>
+    <requirement type="package" version="0.1.5">mimodd</requirement>
+  </requirements>
+  <version_command>mimodd version -q</version_command>
+  <command>
+  	mimodd snpeff-genomes -o $outputfile
+  </command>
+  <outputs>
+    <data name="outputfile" format="tabular" />
+  </outputs>
+<help>
+.. class:: infomark
+
+**What it does**
+
+When executed this tool searches the host machine's SnpEff installation for properly registered and installed
+genome annotation files. The resulting list is added as a plain text file to your history for use with the *Variant Annotation* Tool.
+
+</help>
+
+</tool>
diff -r 000000000000 -r dba25dfccb43 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sat Dec 13 17:19:36 2014 -0500
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="mimodd" version="0.1.5">
+      <repository name="package_mimodd_0_1_5" owner="wolma" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>