Mercurial > repos > workflow4metabolomics > influx_si
comparison README.rst @ 0:9b03a930b08b draft
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| author | workflow4metabolomics |
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| date | Mon, 04 May 2020 03:24:12 -0400 |
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| children | 57f199aa07e4 |
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| 2 Metabolic flux estimation | |
| 3 ------------------------- | |
| 4 | |
| 5 `influx_si` can be used for metabolic flux estimation based on labeling data from MS and/or NMR measurements. `influx_s` is used for stationary labeling and `influx_i` for instationary one (hence the '_s' and '_i' in the names). Tha name `influx_si` is used as common for both tools. | |
| 6 | |
| 7 The input for `influx_si` in one or several FTBL files, each describing a given labeling experiment and options to use during estimation. In addition, for `influx_i` a file with time course data has to be provided for each FTBL file. | |
| 8 | |
| 9 The output is a zip archive with files generated by `influx_si`. Among the most important is file ending with `_res.kvh` which contains the main information about estimated parameters, their statistics and so on. | |
| 10 If, in your FTBL file, you have requested ploting information, it can be found in respective .pdf file. | |
| 11 | |
| 12 For detailed documentation about `influx_si` and accompanying tools see https://metasys.insa-toulouse.fr/software/influx/doc/ | |
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| 14 For getting a standalone version of `influx_si` see https://metasys.insa-toulouse.fr/software/influx/ | |
| 15 | |
| 16 Author: Serguei Sokol | |
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| 18 License: GPL2 | |
| 19 | |
| 20 © INRAE 2020 |