Mercurial > repos > workflow4metabolomics > xcms_plot_eic

diff xcms_plot_eic.xml @ 1:cbedca3ba6e1 draft default tip
planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit bb7574b871cff739f7abbda62a5269ec1f98971f
author: workflow4metabolomics
date: Thu, 15 May 2025 17:02:59 +0000 (6 days ago)
parents: 51015f22fcb7
--- a/xcms_plot_eic.xml	Mon Jul 15 16:03:37 2024 +0000
+++ b/xcms_plot_eic.xml	Thu May 15 17:02:59 2025 +0000
@@ -16,6 +16,9 @@
 library(xcms)
 library(MsExperiment)
 library(Spectra)
+
+sessionInfo()
+
 mse = readMsExperiment(file.path('${input}'))
 offset = ${tolerance_ppm} * 1e-6 * ${mz_value}
 chr = chromatogram(mse, mz = ${mz_value} + c(-offset, offset), msLevel = ${mslevel})
@@ -26,7 +29,6 @@
     </configfiles>
     <inputs>
         <expand macro="base_params"/>
-        <param type="integer" value="1" name="mslevel" min="1" label="MS Level" help="MS level for the EIC"/>
     </inputs>
     <outputs>
         <data name="output_filename" format="png" label="EIC plot at m/z=$mz_value of $input.element_identifier"  />