Mercurial > repos > workflow4metabolomics > xcms_refine

comparison xcms_refine.r @ 1:20f8ebc3a391 draft default tip

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planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 2cb157bd9a8701a3d6874e084032cbd050b8953e
author workflow4metabolomics
date Mon, 11 Sep 2023 09:19:47 +0000
parents eb115eb8f25c
children
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0:eb115eb8f25c 1:20f8ebc3a391
17 } 17 }
18 source_local("lib.r") 18 source_local("lib.r")
19 19
20 pkgs <- c("xcms", "batch", "RColorBrewer") 20 pkgs <- c("xcms", "batch", "RColorBrewer")
21 loadAndDisplayPackages(pkgs) 21 loadAndDisplayPackages(pkgs)
22 cat("\n\n"); 22 cat("\n\n")
23 23
24 # ----- ARGUMENTS ----- 24 # ----- ARGUMENTS -----
25 cat("\tARGUMENTS INFO\n") 25 cat("\tARGUMENTS INFO\n")
26 # interpretation of arguments given in command line as an R list of objects 26 # interpretation of arguments given in command line as an R list of objects
27 args <- parseCommandArgs(evaluate = FALSE) 27 args <- parseCommandArgs(evaluate = FALSE)
28 write.table(as.matrix(args), col.names = F, quote = F, sep = "\t") 28 write.table(as.matrix(args), col.names = FALSE, quote = FALSE, sep = "\t")
29 29
30 cat("\n\n") 30 cat("\n\n")
31 31
32 # ----- PROCESSING INFILE ----- 32 # ----- PROCESSING INFILE -----
33 cat("\tARGUMENTS PROCESSING INFO\n") 33 cat("\tARGUMENTS PROCESSING INFO\n")