Mercurial > repos > workflow4metabolomics > xcms_refine

comparison abims_xcms_refine.xml @ 3:6c2798bce3eb draft default tip

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planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 95721ced8347c09e79340e6d67ecb41c5cc64163
author workflow4metabolomics
date Mon, 03 Feb 2025 14:46:55 +0000
parents 20f8ebc3a391
children
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2:090b33a9981c 3:6c2798bce3eb
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 <import>macros_xcms.xml</import> 7 <import>macros_xcms.xml</import>
8 </macros> 8 </macros>
9 9
10 <expand macro="requirements"/> 10 <expand macro="requirements"/>
11 11 <required_files>
12 <include path="xcms_refine.r" />
13 <include path="lib.r" />
14 </required_files>
12 <expand macro="stdio"/> 15 <expand macro="stdio"/>
13 16
14 <command><![CDATA[ 17 <command><![CDATA[
15 @COMMAND_RSCRIPT@/xcms_refine.r 18 @COMMAND_RSCRIPT@xcms_refine.r
16 image '$image' 19 image '$image'
17 20
18 method $methods.method 21 method $methods.method
19 #if $methods.method == "CleanPeaks": 22 #if $methods.method == "CleanPeaks":
20 maxPeakwidth $methods.maxPeakwidth 23 maxPeakwidth $methods.maxPeakwidth