Mercurial > repos > workflow4metabolomics > xcms_refine
comparison macros.xml @ 0:eb115eb8f25c draft
"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit d4bb3c31e2beca6b4059758c9e76d42c26f8aa55"
author | workflow4metabolomics |
---|---|
date | Thu, 17 Jun 2021 07:42:55 +0000 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:eb115eb8f25c |
---|---|
1 <?xml version="1.0"?> | |
2 <macros> | |
3 <xml name="stdio"> | |
4 <stdio> | |
5 <exit_code range="1" level="fatal" /> | |
6 </stdio> | |
7 </xml> | |
8 | |
9 <!-- COMMAND --> | |
10 <token name="@COMMAND_RSCRIPT@">LC_ALL=C Rscript $__tool_directory__/</token> | |
11 | |
12 <token name="@COMMAND_LOG_EXIT@"> | |
13 ; | |
14 return=\$?; | |
15 cat 'log.txt'; | |
16 sh -c "exit \$return" | |
17 </token> | |
18 | |
19 <!-- INPUT_VALIDATORS --> | |
20 <xml name="input_validator_range_integer"> | |
21 <validator type="regex" message="The format is 'min,max'" >[0-9]+ *, *[0-9]+</validator> | |
22 </xml> | |
23 | |
24 <xml name="input_validator_range_float"> | |
25 <validator type="regex" message="The format is 'min,max'" >[0-9]+\.?[0-9]* *, *[0-9]+\.?[0-9]*</validator> | |
26 </xml> | |
27 | |
28 <xml name="input_validator_list_integer"> | |
29 <validator type="regex" message="The format is '1,2,4,6'" >[0-9, ]+</validator> | |
30 </xml> | |
31 | |
32 | |
33 <token name="@INPUT_IMAGE_LABEL@">RData file</token> | |
34 <token name="@INPUT_IMAGE_HELP@">It contains a xcms3::XCMSnExp object (named xdata)</token> | |
35 | |
36 | |
37 <!-- MISC --> | |
38 <token name="@HELP_AUTHORS_WRAPPERS@"> | |
39 | |
40 .. class:: infomark | |
41 | |
42 **Galaxy integration** ABiMS TEAM - SU/CNRS - Station biologique de Roscoff and Yann Guitton - LABERCA | |
43 Part of Workflow4Metabolomics.org [W4M] | |
44 | |
45 | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool. | |
46 | |
47 </token> | |
48 | |
49 <xml name="citation_w4m"> | |
50 <citation type="doi">10.1093/bioinformatics/btu813</citation> | |
51 </xml> | |
52 </macros> |