Mercurial > repos > workflow4metabolomics > xcms_refine

comparison macros.xml @ 0:eb115eb8f25c draft

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"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit d4bb3c31e2beca6b4059758c9e76d42c26f8aa55"
author workflow4metabolomics
date Thu, 17 Jun 2021 07:42:55 +0000
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-1:000000000000 0:eb115eb8f25c
1 <?xml version="1.0"?>
2 <macros>
3 <xml name="stdio">
4 <stdio>
5 <exit_code range="1" level="fatal" />
6 </stdio>
7 </xml>
8
9 <!-- COMMAND -->
10 <token name="@COMMAND_RSCRIPT@">LC_ALL=C Rscript $__tool_directory__/</token>
11
12 <token name="@COMMAND_LOG_EXIT@">
13 ;
14 return=\$?;
15 cat 'log.txt';
16 sh -c "exit \$return"
17 </token>
18
19 <!-- INPUT_VALIDATORS -->
20 <xml name="input_validator_range_integer">
21 <validator type="regex" message="The format is 'min,max'" >[0-9]+ *, *[0-9]+</validator>
22 </xml>
23
24 <xml name="input_validator_range_float">
25 <validator type="regex" message="The format is 'min,max'" >[0-9]+\.?[0-9]* *, *[0-9]+\.?[0-9]*</validator>
26 </xml>
27
28 <xml name="input_validator_list_integer">
29 <validator type="regex" message="The format is '1,2,4,6'" >[0-9, ]+</validator>
30 </xml>
31
32
33 <token name="@INPUT_IMAGE_LABEL@">RData file</token>
34 <token name="@INPUT_IMAGE_HELP@">It contains a xcms3::XCMSnExp object (named xdata)</token>
35
36
37 <!-- MISC -->
38 <token name="@HELP_AUTHORS_WRAPPERS@">
39
40 .. class:: infomark
41
42 **Galaxy integration** ABiMS TEAM - SU/CNRS - Station biologique de Roscoff and Yann Guitton - LABERCA
43 Part of Workflow4Metabolomics.org [W4M]
44
45 | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool.
46
47 </token>
48
49 <xml name="citation_w4m">
50 <citation type="doi">10.1093/bioinformatics/btu813</citation>
51 </xml>
52 </macros>