diff abims_xcms_refine.xml @ 1:20f8ebc3a391 draft

planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 2cb157bd9a8701a3d6874e084032cbd050b8953e
author workflow4metabolomics
date Mon, 11 Sep 2023 09:19:47 +0000
parents eb115eb8f25c
children
line wrap: on
line diff
--- a/abims_xcms_refine.xml	Thu Jun 17 07:42:55 2021 +0000
+++ b/abims_xcms_refine.xml	Mon Sep 11 09:19:47 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="abims_xcms_refine" name="xcms refineChromPeaks (refine)" version="3.12.0+galaxy0">
+<tool id="abims_xcms_refine" name="xcms refineChromPeaks (refine)" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
 
     <description>Remove or merge chromatographic peaks based on specific criteria.</description>
 
@@ -77,7 +77,7 @@
             test 1 - MergeNeighboringPeaks method
         -->
         <test>
-            <param name="image" value="faahKO-single.xset.merged.RData" ftype="rdata"/>
+            <param name="image" value="faahKO-single-class.xset.merged.group.RData" ftype="rdata"/>
             <conditional name="methods">
                 <param name="method" value="MergeNeighboringPeaks"/>
                 <param name="expandRt" value="2" />
@@ -104,7 +104,7 @@
             test 2 - FilterIntensity method
         -->
         <test>
-            <param name="image" value="faahKO-single.xset.merged.RData" ftype="rdata"/>
+            <param name="image" value="faahKO-single-class.xset.merged.group.RData" ftype="rdata"/>
             <conditional name="methods">
                 <param name="method" value="FilterIntensity"/>
                 <param name="threshold" value="1e5" />
@@ -126,7 +126,7 @@
             test 3 - CleanPeaks method
         -->
         <test>
-            <param name="image" value="faahKO-single.xset.merged.RData" ftype="rdata"/>
+            <param name="image" value="faahKO-single-class.xset.merged.group.RData" ftype="rdata"/>
             <conditional name="methods">
                 <param name="method" value="CleanPeaks"/>
                 <param name="maxPeakwidth" value="8" />
@@ -244,7 +244,7 @@
 Changelog/News
 --------------
 
-.. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
+.. _news: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
 
 
 **Version 3.6.1.0 - 08/02/2021**