Mercurial > repos > xiaoyi-cao > annotatebed

comparison annotateBedWrapper.xml @ 6:133b692c999c draft

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author xiaoyi-cao
date Sun, 02 Dec 2012 14:51:32 -0500
parents 39fa27e915bf
children 7a516a36a25a
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5:39fa27e915bf 6:133b692c999c
1 <tool id="annotateBed" name="annotateBed"> 1 <tool id="annotateBed" name="annotateBed">
2 2
3 <description>Annotate BED files with overlapping BED files</description> 3 <description>Annotate BED files with overlapping BED files</description>
4 4
5 <command> 5 <command>
6 bedtools annotate 6 annotateBed
7 $countflag 7 $countflag
8 -i '$inputRegion' 8 -i '$inputRegion'
9 -names 9 -names
10 #for $i, $s in enumerate($annotateColumn) 10 #for $i, $s in enumerate($annotateColumn)
11 ${s.colname} 11 ${s.colname}