Mercurial > repos > xiaoyi-cao > bedtools_annotate

comparison annotateBedWrapper.xml @ 2:f878353c82d0 draft default tip

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author xiaoyi-cao
date Sun, 02 Dec 2012 15:54:24 -0500
parents bfb51c7bfa8a
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1:bfb51c7bfa8a 2:f878353c82d0
1 <tool id="annotateBed" name="Annotates"> 1 <tool id="annotateBed" name="Annotates" version="0.0.1">
2 2
3 <description> the depth &amp; breadth of coverage of features from multiple files 3 <description> the depth &amp; breadth of coverage of features from multiple files
4 </description> 4 </description>
5 5
6 <requirements> 6 <requirements>
29 <param name="countflag" type="select" label="What to report in the output: "> 29 <param name="countflag" type="select" label="What to report in the output: ">
30 <option value="-counts" selected="true">the count of features in each file that overlap the regions</option> 30 <option value="-counts" selected="true">the count of features in each file that overlap the regions</option>
31 <option value="">fraction of the region covered by each feature</option> 31 <option value="">fraction of the region covered by each feature</option>
32 <option value="-both">Report the counts followed by the % coverage</option> 32 <option value="-both">Report the counts followed by the % coverage</option>
33 </param> 33 </param>
34 <repeat name="annotateColumn" title="Column"> 34 <repeat name="annotateColumn" title="Feature">
35 <param name="colname" type="text" label="Feature name" /> 35 <param name="colname" type="text" label="Feature name" />
36 <param name="colfile" type="data" format="bed" label="Feature file to annotate for the column" /> 36 <param name="colfile" type="data" format="bed" label="Feature file to annotate for the column" />
37 </repeat> 37 </repeat>
38 38
39 </inputs> 39 </inputs>