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1 # Makefile.in generated by automake 1.10.1 from Makefile.am.
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2 # @configure_input@
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3
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4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
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5 # 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
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6 # This Makefile.in is free software; the Free Software Foundation
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7 # gives unlimited permission to copy and/or distribute it,
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8 # with or without modifications, as long as this notice is preserved.
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9
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10 # This program is distributed in the hope that it will be useful,
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11 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
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12 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
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13 # PARTICULAR PURPOSE.
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14
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15 @SET_MAKE@
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16
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17 # Copyright (C) 2008 Assaf Gordon <gordon@cshl.edu>
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18 #
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19 # This file is free software; as a special exception the author gives
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20 # unlimited permission to copy and/or distribute it, with or without
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21 # modifications, as long as this notice is preserved.
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22 #
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23 # This program is distributed in the hope that it will be useful, but
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24 # WITHOUT ANY WARRANTY, to the extent permitted by law; without even the
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25 # implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
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26
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27 VPATH = @srcdir@
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28 pkgdatadir = $(datadir)/@PACKAGE@
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29 pkglibdir = $(libdir)/@PACKAGE@
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30 pkgincludedir = $(includedir)/@PACKAGE@
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31 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
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32 install_sh_DATA = $(install_sh) -c -m 644
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33 install_sh_PROGRAM = $(install_sh) -c
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34 install_sh_SCRIPT = $(install_sh) -c
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35 INSTALL_HEADER = $(INSTALL_DATA)
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36 transform = $(program_transform_name)
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37 NORMAL_INSTALL = :
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38 PRE_INSTALL = :
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39 POST_INSTALL = :
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40 NORMAL_UNINSTALL = :
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41 PRE_UNINSTALL = :
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42 POST_UNINSTALL = :
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43 build_triplet = @build@
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44 host_triplet = @host@
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45 noinst_PROGRAMS = seqalign_test$(EXEEXT)
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46 subdir = src/seqalign_test
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47 DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
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48 ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
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49 am__aclocal_m4_deps = $(top_srcdir)/configure.ac
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50 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
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51 $(ACLOCAL_M4)
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52 mkinstalldirs = $(install_sh) -d
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53 CONFIG_HEADER = $(top_builddir)/config.h
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54 CONFIG_CLEAN_FILES =
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55 PROGRAMS = $(noinst_PROGRAMS)
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56 am_seqalign_test_OBJECTS = seqalign_test.$(OBJEXT)
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57 seqalign_test_OBJECTS = $(am_seqalign_test_OBJECTS)
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58 seqalign_test_DEPENDENCIES = ../libfastx/libfastx.a
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59 DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
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60 depcomp = $(SHELL) $(top_srcdir)/config/depcomp
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61 am__depfiles_maybe = depfiles
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62 CXXCOMPILE = $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
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63 $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
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64 CXXLD = $(CXX)
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65 CXXLINK = $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
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66 -o $@
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67 SOURCES = $(seqalign_test_SOURCES)
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68 DIST_SOURCES = $(seqalign_test_SOURCES)
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69 ETAGS = etags
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70 CTAGS = ctags
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71 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
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72 ACLOCAL = @ACLOCAL@
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73 AMTAR = @AMTAR@
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74 AUTOCONF = @AUTOCONF@
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75 AUTOHEADER = @AUTOHEADER@
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76 AUTOMAKE = @AUTOMAKE@
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77 AWK = @AWK@
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78 CC = @CC@
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79 CCDEPMODE = @CCDEPMODE@
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80 CFLAGS = @CFLAGS@
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81 CPP = @CPP@
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82 CPPFLAGS = @CPPFLAGS@
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83 CXX = @CXX@
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84 CXXCPP = @CXXCPP@
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85 CXXDEPMODE = @CXXDEPMODE@
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86 CXXFLAGS = @CXXFLAGS@
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87 CYGPATH_W = @CYGPATH_W@
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88 DEFS = @DEFS@
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89 DEPDIR = @DEPDIR@
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90 ECHO_C = @ECHO_C@
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91 ECHO_N = @ECHO_N@
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92 ECHO_T = @ECHO_T@
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93 EGREP = @EGREP@
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94 EXEEXT = @EXEEXT@
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95 GREP = @GREP@
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96 INSTALL = @INSTALL@
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97 INSTALL_DATA = @INSTALL_DATA@
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98 INSTALL_PROGRAM = @INSTALL_PROGRAM@
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99 INSTALL_SCRIPT = @INSTALL_SCRIPT@
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100 INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
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101 LDFLAGS = @LDFLAGS@
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102 LIBOBJS = @LIBOBJS@
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103 LIBS = @LIBS@
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104 LTLIBOBJS = @LTLIBOBJS@
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105 MAKEINFO = @MAKEINFO@
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106 MKDIR_P = @MKDIR_P@
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107 OBJEXT = @OBJEXT@
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108 PACKAGE = @PACKAGE@
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109 PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
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110 PACKAGE_NAME = @PACKAGE_NAME@
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111 PACKAGE_STRING = @PACKAGE_STRING@
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112 PACKAGE_TARNAME = @PACKAGE_TARNAME@
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113 PACKAGE_VERSION = @PACKAGE_VERSION@
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114 PATH_SEPARATOR = @PATH_SEPARATOR@
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115 RANLIB = @RANLIB@
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116 SET_MAKE = @SET_MAKE@
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117 SHELL = @SHELL@
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118 STRIP = @STRIP@
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119 VERSION = @VERSION@
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120 abs_builddir = @abs_builddir@
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121 abs_srcdir = @abs_srcdir@
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122 abs_top_builddir = @abs_top_builddir@
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123 abs_top_srcdir = @abs_top_srcdir@
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124 ac_ct_CC = @ac_ct_CC@
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125 ac_ct_CXX = @ac_ct_CXX@
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126 am__include = @am__include@
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127 am__leading_dot = @am__leading_dot@
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128 am__quote = @am__quote@
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129 am__tar = @am__tar@
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130 am__untar = @am__untar@
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131 bindir = @bindir@
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132 build = @build@
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133 build_alias = @build_alias@
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134 build_cpu = @build_cpu@
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135 build_os = @build_os@
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136 build_vendor = @build_vendor@
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137 builddir = @builddir@
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138 canonical_host_type = @canonical_host_type@
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139 datadir = @datadir@
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140 datarootdir = @datarootdir@
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141 docdir = @docdir@
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142 dvidir = @dvidir@
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143 exec_prefix = @exec_prefix@
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144 host = @host@
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145 host_alias = @host_alias@
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146 host_cpu = @host_cpu@
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147 host_os = @host_os@
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148 host_vendor = @host_vendor@
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149 htmldir = @htmldir@
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150 includedir = @includedir@
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151 infodir = @infodir@
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152 install_sh = @install_sh@
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153 libdir = @libdir@
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154 libexecdir = @libexecdir@
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155 localedir = @localedir@
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156 localstatedir = @localstatedir@
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157 mandir = @mandir@
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158 mkdir_p = @mkdir_p@
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159 oldincludedir = @oldincludedir@
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160 pdfdir = @pdfdir@
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161 prefix = @prefix@
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162 program_transform_name = @program_transform_name@
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163 psdir = @psdir@
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164 sbindir = @sbindir@
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165 sharedstatedir = @sharedstatedir@
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166 srcdir = @srcdir@
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167 sysconfdir = @sysconfdir@
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168 target_alias = @target_alias@
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169 top_builddir = @top_builddir@
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170 top_srcdir = @top_srcdir@
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171 AM_CPPFLAGS = \
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172 $(CC_WARNINGS) \
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173 -I../libfastx
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174
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175 seqalign_test_SOURCES = seqalign_test.cpp
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176 seqalign_test_LDADD = ../libfastx/libfastx.a
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177 all: all-am
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178
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179 .SUFFIXES:
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180 .SUFFIXES: .cpp .o .obj
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181 $(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
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182 @for dep in $?; do \
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183 case '$(am__configure_deps)' in \
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184 *$$dep*) \
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185 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \
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186 && exit 0; \
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187 exit 1;; \
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188 esac; \
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189 done; \
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190 echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/seqalign_test/Makefile'; \
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191 cd $(top_srcdir) && \
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192 $(AUTOMAKE) --gnu src/seqalign_test/Makefile
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193 .PRECIOUS: Makefile
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194 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
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195 @case '$?' in \
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196 *config.status*) \
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197 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
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198 *) \
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199 echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
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200 cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
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201 esac;
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202
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203 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
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204 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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205
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206 $(top_srcdir)/configure: $(am__configure_deps)
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207 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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208 $(ACLOCAL_M4): $(am__aclocal_m4_deps)
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209 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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210
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211 clean-noinstPROGRAMS:
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212 -test -z "$(noinst_PROGRAMS)" || rm -f $(noinst_PROGRAMS)
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213 seqalign_test$(EXEEXT): $(seqalign_test_OBJECTS) $(seqalign_test_DEPENDENCIES)
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214 @rm -f seqalign_test$(EXEEXT)
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215 $(CXXLINK) $(seqalign_test_OBJECTS) $(seqalign_test_LDADD) $(LIBS)
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216
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217 mostlyclean-compile:
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218 -rm -f *.$(OBJEXT)
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219
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220 distclean-compile:
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221 -rm -f *.tab.c
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222
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223 @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/seqalign_test.Po@am__quote@
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224
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225 .cpp.o:
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226 @am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
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227 @am__fastdepCXX_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
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228 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
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229 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
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230 @am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $<
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231
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232 .cpp.obj:
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233 @am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
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234 @am__fastdepCXX_TRUE@ mv -f $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
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235 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
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236 @AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
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237 @am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
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238
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239 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
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240 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
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241 unique=`for i in $$list; do \
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242 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
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243 done | \
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244 $(AWK) '{ files[$$0] = 1; nonemtpy = 1; } \
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245 END { if (nonempty) { for (i in files) print i; }; }'`; \
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246 mkid -fID $$unique
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247 tags: TAGS
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248
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249 TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
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250 $(TAGS_FILES) $(LISP)
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251 tags=; \
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252 here=`pwd`; \
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253 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
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254 unique=`for i in $$list; do \
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255 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
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256 done | \
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257 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
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258 END { if (nonempty) { for (i in files) print i; }; }'`; \
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259 if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
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260 test -n "$$unique" || unique=$$empty_fix; \
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261 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
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262 $$tags $$unique; \
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263 fi
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264 ctags: CTAGS
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265 CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
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266 $(TAGS_FILES) $(LISP)
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267 tags=; \
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268 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
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269 unique=`for i in $$list; do \
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270 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
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271 done | \
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272 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
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273 END { if (nonempty) { for (i in files) print i; }; }'`; \
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274 test -z "$(CTAGS_ARGS)$$tags$$unique" \
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275 || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
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276 $$tags $$unique
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277
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278 GTAGS:
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279 here=`$(am__cd) $(top_builddir) && pwd` \
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280 && cd $(top_srcdir) \
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281 && gtags -i $(GTAGS_ARGS) $$here
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282
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283 distclean-tags:
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284 -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
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285
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286 distdir: $(DISTFILES)
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287 @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
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288 topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
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289 list='$(DISTFILES)'; \
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290 dist_files=`for file in $$list; do echo $$file; done | \
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291 sed -e "s|^$$srcdirstrip/||;t" \
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292 -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
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293 case $$dist_files in \
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294 */*) $(MKDIR_P) `echo "$$dist_files" | \
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295 sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
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296 sort -u` ;; \
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297 esac; \
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298 for file in $$dist_files; do \
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299 if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
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300 if test -d $$d/$$file; then \
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301 dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
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302 if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
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303 cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
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304 fi; \
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305 cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
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306 else \
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307 test -f $(distdir)/$$file \
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308 || cp -p $$d/$$file $(distdir)/$$file \
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309 || exit 1; \
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310 fi; \
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311 done
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312 check-am: all-am
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313 check: check-am
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314 all-am: Makefile $(PROGRAMS)
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315 installdirs:
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316 install: install-am
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317 install-exec: install-exec-am
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318 install-data: install-data-am
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319 uninstall: uninstall-am
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320
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321 install-am: all-am
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322 @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
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323
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324 installcheck: installcheck-am
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325 install-strip:
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326 $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
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327 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
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328 `test -z '$(STRIP)' || \
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329 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
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330 mostlyclean-generic:
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331
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332 clean-generic:
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333
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334 distclean-generic:
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335 -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
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336
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337 maintainer-clean-generic:
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338 @echo "This command is intended for maintainers to use"
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339 @echo "it deletes files that may require special tools to rebuild."
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340 clean: clean-am
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341
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342 clean-am: clean-generic clean-noinstPROGRAMS mostlyclean-am
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343
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344 distclean: distclean-am
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345 -rm -rf ./$(DEPDIR)
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346 -rm -f Makefile
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347 distclean-am: clean-am distclean-compile distclean-generic \
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348 distclean-tags
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349
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350 dvi: dvi-am
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351
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352 dvi-am:
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353
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354 html: html-am
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355
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356 info: info-am
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357
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358 info-am:
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359
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360 install-data-am:
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361
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362 install-dvi: install-dvi-am
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363
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364 install-exec-am:
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365
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366 install-html: install-html-am
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367
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368 install-info: install-info-am
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369
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370 install-man:
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371
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372 install-pdf: install-pdf-am
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373
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374 install-ps: install-ps-am
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375
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376 installcheck-am:
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377
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378 maintainer-clean: maintainer-clean-am
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379 -rm -rf ./$(DEPDIR)
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380 -rm -f Makefile
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381 maintainer-clean-am: distclean-am maintainer-clean-generic
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382
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383 mostlyclean: mostlyclean-am
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384
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385 mostlyclean-am: mostlyclean-compile mostlyclean-generic
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386
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387 pdf: pdf-am
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388
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389 pdf-am:
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390
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391 ps: ps-am
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392
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393 ps-am:
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394
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395 uninstall-am:
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396
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397 .MAKE: install-am install-strip
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398
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399 .PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
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400 clean-noinstPROGRAMS ctags distclean distclean-compile \
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401 distclean-generic distclean-tags distdir dvi dvi-am html \
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402 html-am info info-am install install-am install-data \
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403 install-data-am install-dvi install-dvi-am install-exec \
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404 install-exec-am install-html install-html-am install-info \
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405 install-info-am install-man install-pdf install-pdf-am \
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406 install-ps install-ps-am install-strip installcheck \
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407 installcheck-am installdirs maintainer-clean \
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408 maintainer-clean-generic mostlyclean mostlyclean-compile \
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409 mostlyclean-generic pdf pdf-am ps ps-am tags uninstall \
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410 uninstall-am
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411
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412 # Tell versions [3.59,3.63) of GNU make to not export all variables.
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413 # Otherwise a system limit (for SysV at least) may be exceeded.
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414 .NOEXPORT:
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