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author xilinxu
date Thu, 14 Aug 2014 04:52:17 -0400
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1 # Makefile.in generated by automake 1.10.1 from Makefile.am.
2 # @configure_input@
3
4 # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
5 # 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
6 # This Makefile.in is free software; the Free Software Foundation
7 # gives unlimited permission to copy and/or distribute it,
8 # with or without modifications, as long as this notice is preserved.
9
10 # This program is distributed in the hope that it will be useful,
11 # but WITHOUT ANY WARRANTY, to the extent permitted by law; without
12 # even the implied warranty of MERCHANTABILITY or FITNESS FOR A
13 # PARTICULAR PURPOSE.
14
15 @SET_MAKE@
16
17 # Copyright (C) 2008 Assaf Gordon <gordon@cshl.edu>
18 #
19 # This file is free software; as a special exception the author gives
20 # unlimited permission to copy and/or distribute it, with or without
21 # modifications, as long as this notice is preserved.
22 #
23 # This program is distributed in the hope that it will be useful, but
24 # WITHOUT ANY WARRANTY, to the extent permitted by law; without even the
25 # implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
26 VPATH = @srcdir@
27 pkgdatadir = $(datadir)/@PACKAGE@
28 pkglibdir = $(libdir)/@PACKAGE@
29 pkgincludedir = $(includedir)/@PACKAGE@
30 am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
31 install_sh_DATA = $(install_sh) -c -m 644
32 install_sh_PROGRAM = $(install_sh) -c
33 install_sh_SCRIPT = $(install_sh) -c
34 INSTALL_HEADER = $(INSTALL_DATA)
35 transform = $(program_transform_name)
36 NORMAL_INSTALL = :
37 PRE_INSTALL = :
38 POST_INSTALL = :
39 NORMAL_UNINSTALL = :
40 PRE_UNINSTALL = :
41 POST_UNINSTALL = :
42 build_triplet = @build@
43 host_triplet = @host@
44 subdir = src
45 DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
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52 CONFIG_CLEAN_FILES =
53 SOURCES =
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56 html-recursive info-recursive install-data-recursive \
57 install-dvi-recursive install-exec-recursive \
58 install-html-recursive install-info-recursive \
59 install-pdf-recursive install-ps-recursive install-recursive \
60 installcheck-recursive installdirs-recursive pdf-recursive \
61 ps-recursive uninstall-recursive
62 RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \
63 distclean-recursive maintainer-clean-recursive
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92 INSTALL = @INSTALL@
93 INSTALL_DATA = @INSTALL_DATA@
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137 docdir = @docdir@
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142 host_cpu = @host_cpu@
143 host_os = @host_os@
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167 SUBDIRS = libfastx \
168 fastx_clipper \
169 fastx_trimmer \
170 fastx_quality_stats \
171 fastq_quality_converter \
172 fastq_to_fasta \
173 fastq_quality_filter \
174 fastx_artifacts_filter \
175 fastx_reverse_complement \
176 fastx_collapser \
177 seqalign_test
178
179 all: all-recursive
180
181 .SUFFIXES:
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183 @for dep in $?; do \
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185 *$$dep*) \
186 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh \
187 && exit 0; \
188 exit 1;; \
189 esac; \
190 done; \
191 echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu src/Makefile'; \
192 cd $(top_srcdir) && \
193 $(AUTOMAKE) --gnu src/Makefile
194 .PRECIOUS: Makefile
195 Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
196 @case '$?' in \
197 *config.status*) \
198 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
199 *) \
200 echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
201 cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
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204 $(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
205 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
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207 $(top_srcdir)/configure: $(am__configure_deps)
208 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
209 $(ACLOCAL_M4): $(am__aclocal_m4_deps)
210 cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
211
212 # This directory's subdirectories are mostly independent; you can cd
213 # into them and run `make' without going through this Makefile.
214 # To change the values of `make' variables: instead of editing Makefiles,
215 # (1) if the variable is set in `config.status', edit `config.status'
216 # (which will cause the Makefiles to be regenerated when you run `make');
217 # (2) otherwise, pass the desired values on the `make' command line.
218 $(RECURSIVE_TARGETS):
219 @failcom='exit 1'; \
220 for f in x $$MAKEFLAGS; do \
221 case $$f in \
222 *=* | --[!k]*);; \
223 *k*) failcom='fail=yes';; \
224 esac; \
225 done; \
226 dot_seen=no; \
227 target=`echo $@ | sed s/-recursive//`; \
228 list='$(SUBDIRS)'; for subdir in $$list; do \
229 echo "Making $$target in $$subdir"; \
230 if test "$$subdir" = "."; then \
231 dot_seen=yes; \
232 local_target="$$target-am"; \
233 else \
234 local_target="$$target"; \
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236 (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
237 || eval $$failcom; \
238 done; \
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240 $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
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243 $(RECURSIVE_CLEAN_TARGETS):
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246 case $$f in \
247 *=* | --[!k]*);; \
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253 distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
254 *) list='$(SUBDIRS)' ;; \
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257 if test "$$subdir" = "."; then :; else \
258 rev="$$subdir $$rev"; \
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261 rev="$$rev ."; \
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279 test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
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282 ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
283 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
284 unique=`for i in $$list; do \
285 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
286 done | \
287 $(AWK) '{ files[$$0] = 1; nonemtpy = 1; } \
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289 mkid -fID $$unique
290 tags: TAGS
291
292 TAGS: tags-recursive $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
293 $(TAGS_FILES) $(LISP)
294 tags=; \
295 here=`pwd`; \
296 if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
297 include_option=--etags-include; \
298 empty_fix=.; \
299 else \
300 include_option=--include; \
301 empty_fix=; \
302 fi; \
303 list='$(SUBDIRS)'; for subdir in $$list; do \
304 if test "$$subdir" = .; then :; else \
305 test ! -f $$subdir/TAGS || \
306 tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
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308 done; \
309 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
310 unique=`for i in $$list; do \
311 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
312 done | \
313 $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
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315 if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
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317 $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
318 $$tags $$unique; \
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322 $(TAGS_FILES) $(LISP)
323 tags=; \
324 list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
325 unique=`for i in $$list; do \
326 if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
327 done | \
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332 $$tags $$unique
333
334 GTAGS:
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336 && cd $(top_srcdir) \
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338
339 distclean-tags:
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341
342 distdir: $(DISTFILES)
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401 install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
402 `test -z '$(STRIP)' || \
403 echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
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405
406 clean-generic:
407
408 distclean-generic:
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410
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464 ps-am:
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468 .MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
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484 # Tell versions [3.59,3.63) of GNU make to not export all variables.
485 # Otherwise a system limit (for SysV at least) may be exceeded.
486 .NOEXPORT: