Mercurial > repos > xilinxu > xilinxu
view fastx_toolkit-0.0.6/galaxy/tools/fastx_toolkit/fastx_reverse_complement.xml @ 3:997f5136985f draft default tip
Uploaded
author | xilinxu |
---|---|
date | Thu, 14 Aug 2014 04:52:17 -0400 |
parents | |
children |
line wrap: on
line source
<tool id="cshl_fastx_reverse_complement" name="Reverse-Complement"> <description>sequences</description> <command>zcat -f '$input' | fastx_reverse_complement -v -o $output</command> <inputs> <param format="fasta,fastqsolexa" name="input" type="data" label="Library to reverse-complement" /> </inputs> <tests> <test> <!-- Reverse-complement a FASTA file --> <param name="input" value="fastx_rev_comp1.fasta" /> <output name="output" file="fastx_reverse_complement1.out" /> </test> <test> <!-- Reverse-complement a FASTQ file --> <param name="input" value="fastx_rev_comp2.fastq" /> <output name="output" file="fastx_reverse_complement2.out" /> </test> </tests> <outputs> <data format="input" name="output" metadata_source="input" /> </outputs> <help> **What it does** This tool reverse-complements each sequence in a library. If the library is a FASTQ, the quality-scores are also reversed. -------- **Example** Input FASTQ file:: @CSHL_1_FC42AGWWWXX:8:1:3:740 TGTCTGTAGCCTCNTCCTTGTAATTCAAAGNNGGTA +CSHL_1_FC42AGWWWXX:8:1:3:740 33 33 33 34 33 33 33 33 33 33 33 33 27 5 27 33 33 33 33 33 33 27 21 27 33 32 31 29 26 24 5 5 15 17 27 26 Output FASTQ file:: @CSHL_1_FC42AGWWWXX:8:1:3:740 TACCNNCTTTGAATTACAAGGANGAGGCTACAGACA +CSHL_1_FC42AGWWWXX:8:1:3:740 26 27 17 15 5 5 24 26 29 31 32 33 27 21 27 33 33 33 33 33 33 27 5 27 33 33 33 33 33 33 33 33 34 33 33 33 </help> </tool>