Mercurial > repos > ximgchess > hedm_npz_to_tesr
comparison hedm_npz_to_tesr.xml @ 0:bd74229f61e8 draft
"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hedm_npz_to_tesr commit 0db0d2633f65e2ceca2e34c8899a52b18965d059-dirty"
| author | ximgchess |
|---|---|
| date | Thu, 01 Apr 2021 18:30:44 +0000 |
| parents | |
| children | e90d5493a744 |
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| -1:000000000000 | 0:bd74229f61e8 |
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| 1 <tool id="hedm_npz_to_tesr" name="HEDM to tesr" version="0.1.0" python_template_version="3.5"> | |
| 2 <description>Convert HEDM npz to a Neper tesr</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="1.19">numpy</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | |
| 7 $__tool_directory__/hedm_npz_to_tesr.py | |
| 8 --voxel_spacing $voxel_spacing | |
| 9 #if $names.x_name: | |
| 10 -x '$names.x_name' | |
| 11 #end if | |
| 12 #if $names.y_name: | |
| 13 -y '$names.y_name' | |
| 14 #end if | |
| 15 #if $names.z_name: | |
| 16 -z '$names.z_name' | |
| 17 #end if | |
| 18 #if $names.grain_map: | |
| 19 --grain_map '$names.grain_map' | |
| 20 #end if | |
| 21 '$input' | |
| 22 '$output' | |
| 23 ]]></command> | |
| 24 <inputs> | |
| 25 <!-- change format to approriate npz subclass when available --> | |
| 26 <param name="input" type="data" format="zip" label="HEDM npz file"/> | |
| 27 <param name="voxel_spacing" type="float" value="0.005" min="0" label="Voxel spacing"/> | |
| 28 <section name="names" expanded="false" title="Specify names used in HEDM.npz input file"> | |
| 29 <param name="x_name" type="text" value="" label="Name of the X array in the input" optional="true" help="Deafault is a name containing 'X'"/> | |
| 30 <param name="y_name" type="text" value="" label="Name of the Y array in the input" optional="true" help="Deafault is a name containing 'Y'"/> | |
| 31 <param name="z_name" type="text" value="" label="Name of the Z array in the input" optional="true" help="Deafault is a name containing 'Z'"/> | |
| 32 <param name="grain_map" type="text" value="" label="Name of the grain map in the input" optional="true" help="Deafault is a name containing 'grain'"/> | |
| 33 </section> | |
| 34 </inputs> | |
| 35 <outputs> | |
| 36 <!-- output format should be changed to tesr when that is available --> | |
| 37 <data name="output" format="txt" label="${input.name.rsplit(sep='.',maxsplit=1)[0]}.tesr"/> | |
| 38 </outputs> | |
| 39 <tests> | |
| 40 <test> | |
| 41 <!-- change format to approriate npz subclass when available --> | |
| 42 <param name="input" ftype="zip" value="HEDM_map.npz"/> | |
| 43 <output name="output" file="HEDM_map.tesr"/> | |
| 44 </test> | |
| 45 </tests> | |
| 46 <help><![CDATA[ | |
| 47 Create a neper compatible tesr format file from a HEDM numpy compressed file. | |
| 48 The converter will look for columns named: Xs, Ys, Zs, and grain_map by default, | |
| 49 If the input file uses different names, the user should specify them. | |
| 50 ]]></help> | |
| 51 </tool> |