Mercurial > repos > ximgchess > hedm_npz_to_tesr
diff hedm_npz_to_tesr.xml @ 0:bd74229f61e8 draft
"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hedm_npz_to_tesr commit 0db0d2633f65e2ceca2e34c8899a52b18965d059-dirty"
author | ximgchess |
---|---|
date | Thu, 01 Apr 2021 18:30:44 +0000 |
parents | |
children | e90d5493a744 |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/hedm_npz_to_tesr.xml Thu Apr 01 18:30:44 2021 +0000 @@ -0,0 +1,51 @@ +<tool id="hedm_npz_to_tesr" name="HEDM to tesr" version="0.1.0" python_template_version="3.5"> + <description>Convert HEDM npz to a Neper tesr</description> + <requirements> + <requirement type="package" version="1.19">numpy</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + $__tool_directory__/hedm_npz_to_tesr.py + --voxel_spacing $voxel_spacing + #if $names.x_name: + -x '$names.x_name' + #end if + #if $names.y_name: + -y '$names.y_name' + #end if + #if $names.z_name: + -z '$names.z_name' + #end if + #if $names.grain_map: + --grain_map '$names.grain_map' + #end if + '$input' + '$output' + ]]></command> + <inputs> + <!-- change format to approriate npz subclass when available --> + <param name="input" type="data" format="zip" label="HEDM npz file"/> + <param name="voxel_spacing" type="float" value="0.005" min="0" label="Voxel spacing"/> + <section name="names" expanded="false" title="Specify names used in HEDM.npz input file"> + <param name="x_name" type="text" value="" label="Name of the X array in the input" optional="true" help="Deafault is a name containing 'X'"/> + <param name="y_name" type="text" value="" label="Name of the Y array in the input" optional="true" help="Deafault is a name containing 'Y'"/> + <param name="z_name" type="text" value="" label="Name of the Z array in the input" optional="true" help="Deafault is a name containing 'Z'"/> + <param name="grain_map" type="text" value="" label="Name of the grain map in the input" optional="true" help="Deafault is a name containing 'grain'"/> + </section> + </inputs> + <outputs> + <!-- output format should be changed to tesr when that is available --> + <data name="output" format="txt" label="${input.name.rsplit(sep='.',maxsplit=1)[0]}.tesr"/> + </outputs> + <tests> + <test> + <!-- change format to approriate npz subclass when available --> + <param name="input" ftype="zip" value="HEDM_map.npz"/> + <output name="output" file="HEDM_map.tesr"/> + </test> + </tests> + <help><![CDATA[ + Create a neper compatible tesr format file from a HEDM numpy compressed file. + The converter will look for columns named: Xs, Ys, Zs, and grain_map by default, + If the input file uses different names, the user should specify them. + ]]></help> +</tool>