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comparison hexrd_find_orientations.xml @ 3:54513f5fc836 draft

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"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hexrd commit f29a6f52c76e068908ab2e1161314eb3edcfe4c9"
author ximgchess
date Wed, 31 Mar 2021 14:56:35 +0000
parents f0db3e3b9d99
children
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2:f0db3e3b9d99 3:54513f5fc836
1 <tool id="hexrd_find_orientations" name="HEXRD find-orientations" version="@TOOL_VERSION@+galaxy0" python_template_version="3.5"> 1 <tool id="hexrd_find_orientations" name="HEXRD find-orientations" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" python_template_version="3.5">
2 <description>Process rotation image series to find grain orientations</description> 2 <description>Process rotation image series to find grain orientations</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
37 <param name="inputs" ftype="hexrd.npz" value="RUBY_0000-fc_GE.npz,RUBY_0001-fc_GE.npz,RUBY_0002-fc_GE.npz,RUBY_0003-fc_GE.npz,RUBY_0004-fc_GE.npz,RUBY_0005-fc_GE.npz"/> 37 <param name="inputs" ftype="hexrd.npz" value="RUBY_0000-fc_GE.npz,RUBY_0001-fc_GE.npz,RUBY_0002-fc_GE.npz,RUBY_0003-fc_GE.npz,RUBY_0004-fc_GE.npz,RUBY_0005-fc_GE.npz"/>
38 <conditional name="detector"> 38 <conditional name="detector">
39 <param name="panel_assignment" value="infer_from_name"/> 39 <param name="panel_assignment" value="infer_from_name"/>
40 </conditional> 40 </conditional>
41 <param name="instrument" ftype="hexrd.yml" value="ge_detector.yml"/> 41 <param name="instrument" ftype="hexrd.yml" value="ge_detector.yml"/>
42 <param name="material" ftype="material.hexrd" value="materials_py38.hexrd"/> 42 <param name="material" ftype="hexrd.materials.h5" value="materials.h5"/>
43 <param name="active_material" value="ruby"/> 43 <param name="active_material" value="ruby"/>
44 <section name="orientation_maps"> 44 <section name="orientation_maps">
45 <param name="threshold" value="25"/> 45 <param name="threshold" value="25"/>
46 <param name="bin_frames" value="1"/> 46 <param name="bin_frames" value="1"/>
47 <param name="active_hkls" value="0,1,2,3,4,5"/> 47 <param name="active_hkls" value="0,1,2,3,4,5"/>