Mercurial > repos > ximgchess > hexrd

comparison macros.xml @ 3:54513f5fc836 draft

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"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hexrd commit f29a6f52c76e068908ab2e1161314eb3edcfe4c9"
author ximgchess
date Wed, 31 Mar 2021 14:56:35 +0000
parents f0db3e3b9d99
children
comparison
equal deleted inserted replaced
2:f0db3e3b9d99 3:54513f5fc836
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">0.8.0</token> 2 <token name="@TOOL_VERSION@">0.8.4</token>
3 <token name="@VERSION_SUFFIX@">0</token>
3 <xml name="requirements"> 4 <xml name="requirements">
4 <requirements> 5 <requirements>
5 <requirement type="package" version="@TOOL_VERSION@">hexrd</requirement> 6 <requirement type="package" version="@TOOL_VERSION@">hexrd</requirement>
6 <yield/> 7 <yield/>
7 </requirements> 8 </requirements>
70 <help>A 2-column table:image dataset name detector panel name</help> 71 <help>A 2-column table:image dataset name detector panel name</help>
71 </param> 72 </param>
72 </when> 73 </when>
73 </conditional> 74 </conditional>
74 <param name="instrument" type="data" format="hexrd.yml" label="instrument"/> 75 <param name="instrument" type="data" format="hexrd.yml" label="instrument"/>
75 <param name="material" type="data" format="material.hexrd" label="material"/> 76 <param name="material" type="data" format="hexrd.materials.h5" label="material"/>
76 <param name="active_material" type="text" value="" label="active material name"> 77 <param name="active_material" type="text" value="" label="active material name">
77 <validator type="empty_field" /> 78 <validator type="empty_field" />
78 </param> 79 </param>
79 </xml> 80 </xml>
80 81
81 <token name="@CMD_LINKS@"><![CDATA[@CMD_IMPORTS@ 82 <token name="@CMD_LINKS@"><![CDATA[@CMD_IMPORTS@
82 mkdir -p imageseries && 83 mkdir -p imageseries &&
83 ln -s '$material' $ln_name($material,'hexrd') && 84 ln -s '$material' $ln_name($material,'h5') &&
84 ln -s '$instrument' $ln_name($instrument,'yml') && 85 ln -s '$instrument' $ln_name($instrument,'yml') &&
85 #for $input in $inputs 86 #for $input in $inputs
86 ln -s '$input' imageseries/$ln_name($input,'npz') && 87 ln -s '$input' imageseries/$ln_name($input,'npz') &&
87 #end for 88 #end for
88 ]]> 89 ]]>
101 analysis_name: analysis 102 analysis_name: analysis
102 103
103 multiprocessing: -1 104 multiprocessing: -1
104 105
105 material: 106 material:
106 definitions: $ln_name($material,'hexrd') 107 definitions: $ln_name($material,'h5')
107 active: $active_material 108 active: $active_material
108 109
109 instrument: $ln_name($instrument,'yml') 110 instrument: $ln_name($instrument,'yml')
110 111
111 image_series: 112 image_series: