Mercurial > repos > ximgchess > hexrd

comparison hexrd_fit_grains.xml @ 7:baba452d0613 draft

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"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hexrd commit c6c9ce811a27cdee735c2eeac9f6a29f95d9ae90"
author ximgchess
date Tue, 04 Jan 2022 22:07:42 +0000
parents 164e881c40e2
children a35bda7ed678
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6:164e881c40e2 7:baba452d0613
20 </configfiles> 20 </configfiles>
21 <inputs> 21 <inputs>
22 <expand macro="fit_grains_config"/> 22 <expand macro="fit_grains_config"/>
23 </inputs> 23 </inputs>
24 <outputs> 24 <outputs>
25 <data name="config" format="hexrd.yml" label="${tool.name} on ${on_string}: ${active_material}_config.yml"/> 25 <data name="config" format="yaml" label="${tool.name} on ${on_string}: ${active_material}_config.yml"/>
26 <data name="log" format="txt" label="${tool.name} on ${on_string}:fit_grains_analysis_${active_material}.log"/> 26 <data name="log" format="txt" label="${tool.name} on ${on_string}:fit_grains_analysis_${active_material}.log"/>
27 <data name="grains" format="tabular" label="${tool.name} on ${on_string}: grains.out" from_work_dir="analysis/grains.out" /> 27 <data name="grains" format="tabular" label="${tool.name} on ${on_string}: grains.out" from_work_dir="analysis/grains.out" />
28 <collection name="spots" type="list" label="${tool.name} on ${on_string}:spots"> 28 <collection name="spots" type="list" label="${tool.name} on ${on_string}:spots">
29 <discover_datasets pattern="(?P&lt;designation&gt;.+_spots.+\.out)" ext="tabular" directory="analysis"/> 29 <discover_datasets pattern="(?P&lt;designation&gt;.+_spots.+\.out)" ext="tabular" directory="analysis"/>
30 </collection> 30 </collection>
31 </outputs> 31 </outputs>
32 <tests> 32 <tests>
33 <test> 33 <test>
34 <param name="inputs" ftype="hexrd.npz" value="RUBY_0000-fc_GE.npz,RUBY_0001-fc_GE.npz,RUBY_0002-fc_GE.npz,RUBY_0003-fc_GE.npz,RUBY_0004-fc_GE.npz,RUBY_0005-fc_GE.npz"/> 34 <param name="inputs" ftype="hexrd.iamges.npz" value="RUBY_0000-fc_GE.npz,RUBY_0001-fc_GE.npz,RUBY_0002-fc_GE.npz,RUBY_0003-fc_GE.npz,RUBY_0004-fc_GE.npz,RUBY_0005-fc_GE.npz"/>
35 <conditional name="detector"> 35 <conditional name="detector">
36 <param name="panel_assignment" value="infer_from_name"/> 36 <param name="panel_assignment" value="infer_from_name"/>
37 </conditional> 37 </conditional>
38 <param name="instrument" ftype="hexrd.yml" value="ge_detector.yml"/> 38 <param name="instrument" ftype="yaml" value="ge_detector.yml"/>
39 <param name="material" ftype="hexrd.materials.h5" value="materials.h5"/> 39 <param name="material" ftype="hexrd.materials.h5" value="materials.h5"/>
40 <param name="active_material" value="ruby"/> 40 <param name="active_material" value="ruby"/>
41 <param name="ome_map" ftype="hexrd.npz" value="analysis_ruby_eta-ome_maps.npz"/> 41 <param name="ome_map" ftype="hexrd.eta_ome.npz" value="analysis_ruby_eta-ome_maps.npz"/>
42 <param name="accepted_orientations" ftype="tabular" value="accepted_orientations_analysis_ruby.dat"/> 42 <param name="accepted_orientations" ftype="tabular" value="accepted_orientations_analysis_ruby.dat"/>
43 <param name="grains_estimate" ftype="tabular" value="grains.out"/> 43 <param name="grains_estimate" ftype="tabular" value="grains.out"/>
44 <param name="do_fit" value="true"/> 44 <param name="do_fit" value="true"/>
45 <param name="npdiv" value="2"/> 45 <param name="npdiv" value="2"/>
46 <param name="threshold" value="25"/> 46 <param name="threshold" value="25"/>