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comparison macros.xml @ 7:baba452d0613 draft

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"planemo upload for repository https://github.com/ximg-chess/galaxytools/tools/hexrd commit c6c9ce811a27cdee735c2eeac9f6a29f95d9ae90"
author ximgchess
date Tue, 04 Jan 2022 22:07:42 +0000
parents 164e881c40e2
children 4bb02acaaabc
comparison
equal deleted inserted replaced
6:164e881c40e2 7:baba452d0613
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">0.8.12</token> 2 <token name="@TOOL_VERSION@">0.8.12</token>
3 <token name="@VERSION_SUFFIX@">0</token> 3 <token name="@VERSION_SUFFIX@">1</token>
4 <token name="@PROFILE@">21.09</token> 4 <token name="@PROFILE@">21.09</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">hexrd</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">hexrd</requirement>
8 <yield/> 8 <yield/>
71 <param name="image_panel_table" type="data" format="tabular" label="Image panel assignment table"> 71 <param name="image_panel_table" type="data" format="tabular" label="Image panel assignment table">
72 <help>A 2-column table:image dataset name detector panel name</help> 72 <help>A 2-column table:image dataset name detector panel name</help>
73 </param> 73 </param>
74 </when> 74 </when>
75 </conditional> 75 </conditional>
76 <param name="instrument" type="data" format="hexrd.yml" label="instrument"/> 76 <param name="instrument" type="data" format="yaml" label="instrument"/>
77 <param name="material" type="data" format="hexrd.materials.h5" label="material"/> 77 <param name="material" type="data" format="hexrd.materials.h5" label="material"/>
78 <param name="active_material" type="select" label="active material name"> 78 <param name="active_material" type="select" label="active material name">
79 <options> 79 <options>
80 <filter type="data_meta" ref="material" key="materials"/> 80 <filter type="data_meta" ref="material" key="materials"/>
81 </options> 81 </options>
192 <param name="overlap" type="float" value="0.1" min="0" max="1.0" label="blob_log overlap"/> 192 <param name="overlap" type="float" value="0.1" min="0" max="1.0" label="blob_log overlap"/>
193 </when> 193 </when>
194 </conditional> 194 </conditional>
195 </when> 195 </when>
196 <when value="use_quaternion_grid"> 196 <when value="use_quaternion_grid">
197 <param name="quaternion_grid" type="data" format="hexrd.npz" label="quaterion grid file"/> 197 <param name="quaternion_grid" type="data" format="npz" label="quaterion grid file"/>
198 </when> 198 </when>
199 </conditional> 199 </conditional>
200 </section> 200 </section>
201 <section name="omega" title="Omega" expanded="true"> 201 <section name="omega" title="Omega" expanded="true">
202 <param name="omega_tolerance" type="float" value="1.0" min="0" max="10.0" label="omega tolerance"/> 202 <param name="omega_tolerance" type="float" value="1.0" min="0" max="10.0" label="omega tolerance"/>
299 ]]></token> 299 ]]></token>
300 300
301 <xml name="fit_grains_config"> 301 <xml name="fit_grains_config">
302 <expand macro="common_config" token_multiple_inputs="true"/> 302 <expand macro="common_config" token_multiple_inputs="true"/>
303 <param name="ome_map" type="data" format="hexrd.eta_ome.npz" label="analysis eta-ome_maps.npz from find_orientations"/> 303 <param name="ome_map" type="data" format="hexrd.eta_ome.npz" label="analysis eta-ome_maps.npz from find_orientations"/>
304 <param name="accepted_orientations" type="data" format="hexrd.accepted_orientations" label="accepted_orientations from find_orientations"/> 304 <param name="accepted_orientations" type="data" format="tabular" label="accepted_orientations from find_orientations"/>
305 <param name="grains_estimate" type="data" format="tabular" label="grains.out from find_orientations"/> 305 <param name="grains_estimate" type="data" format="tabular" label="grains.out from find_orientations"/>
306 <param name="do_fit" type="boolean" truevalue="true" falsevalue="false" checked="true" label="fit grains" help="if false, extracts grains but doesn't fit"/> 306 <param name="do_fit" type="boolean" truevalue="true" falsevalue="false" checked="true" label="fit grains" help="if false, extracts grains but doesn't fit"/>
307 <param name="npdiv" type="integer" value="2" min="1" label="number of polar pixel grid subdivisions"/> 307 <param name="npdiv" type="integer" value="2" min="1" label="number of polar pixel grid subdivisions"/>
308 <param name="threshold" type="integer" value="25" min="1" label="threshold"/> 308 <param name="threshold" type="integer" value="25" min="1" label="threshold"/>
309 <section name="tolerance" title="Fit Grain Tolerance" expanded="true"> 309 <section name="tolerance" title="Fit Grain Tolerance" expanded="true">