# HG changeset patch
# User xuebing
# Date 1333213181 14400
# Node ID 2cc30e606803ea88f41a203262fefa868458978a
# Parent  c8c130b067aa96cc466016811575243932157b7e
Deleted selected files

diff -r c8c130b067aa -r 2cc30e606803 bedclean.xml
--- a/bedclean.xml	Sat Mar 31 12:59:18 2012 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,33 +0,0 @@
-<tool id="bedclean" name="clean interval">
-  <description>remove off-chromosome lines</description>
-  <command interpreter="python">bedclean.py $input $genome $output > $log  </command>
-  <inputs>
-     <param name="input" type="data" format="interval" label="Original interval file"/>
-    <param name="genome" type="select" label="Select genome">
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm9.genome" selected="true">mm9</option>
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm8.genome">mm8</option>
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg18.genome">hg18</option>
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg19.genome">hg19</option>
-    </param>
-  </inputs>
-  <outputs>
-    <data format="input" name="output" label="${tool.name} on ${on_string} (interval)"/>
-    <data format="txt" name="log" label="${tool.name} on ${on_string} (log)"/>
-  </outputs>
-  <help>
-
-**Description**
-
-remove lines that are
-
-1. comment or track name lines
-
-2. on chr*_random
-
-3. or have negative coordinates
-
-4. or the end is larger than chromosome size
-
-
-  </help>
-</tool>