# HG changeset patch
# User xuebing
# Date 1333217090 14400
# Node ID c5bf1ec88e4eae2d5cf8d436c15b387848e735db
# Parent  ccd3fd69df1a835ac9e78f8d5280edb5b36a5c87
Uploaded

diff -r ccd3fd69df1a -r c5bf1ec88e4e bed_to_bigwig.xml
--- a/bed_to_bigwig.xml	Sat Mar 31 14:04:04 2012 -0400
+++ b/bed_to_bigwig.xml	Sat Mar 31 14:04:50 2012 -0400
@@ -20,12 +20,13 @@
 		    <param name="input" type="data" format="bam" label="Input file"/>
 	    </when>
     </conditional>
-    <param name="genome" type="select" label="Select genome">
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm9.genome" selected="true">mm9</option>
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/mouse.mm8.genome">mm8</option>
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg18.genome">hg18</option>
-     <option value="/Users/xuebing/galaxy-dist/tool-data/genome/chrsize/human.hg19.genome">hg19</option>
-    </param>
+           <param name="genome" type="select" label="Select chromsome size file" >
+                <options from_file="chrsize.loc">
+                    <column name="name" index="0"/>
+                    <column name="value" index="1"/>
+                </options>
+            </param>
+
     <param name="sorted" label="Check if the input is sorted" type="boolean" truevalue="sorted" falsevalue="none" checked="False"/>
     <param name="split" label="Split junctions" help="Treat 'split' BAM or BED12 entries as distinct BED intervals." type="boolean" truevalue="-split" falsevalue="" checked="False"/>
   </inputs>