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1 <tool id="bed_window" name="bed_window">
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2 <description>make a window around interval center </description>
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3 <command interpreter="python"> bed_window.py $input $output $window </command>
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4 <inputs>
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5 <param name="input" type="data" format="interval" label="Input interval file"/>
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6 <param name="window" type="integer" value="1000" label="window size (bps)" />
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7 </inputs>
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8 <outputs>
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9 <data format="input" name="output" />
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10 </outputs>
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11 <help>
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12
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13 **Description**
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14
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15 For each interval in the input file, take the middle point, then extend each side windowsize/2 bps.
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16
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17 </help>
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18 </tool>
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