Mercurial > repos > xuebing > bed_window
comparison bed_window.xml @ 0:21b4cb068fab
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| author | xuebing |
|---|---|
| date | Sat, 31 Mar 2012 14:05:34 -0400 |
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| children |
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| -1:000000000000 | 0:21b4cb068fab |
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| 1 <tool id="bed_window" name="bed_window"> | |
| 2 <description>make a window around interval center </description> | |
| 3 <command interpreter="python"> bed_window.py $input $output $window </command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="interval" label="Input interval file"/> | |
| 6 <param name="window" type="integer" value="1000" label="window size (bps)" /> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="input" name="output" /> | |
| 10 </outputs> | |
| 11 <help> | |
| 12 | |
| 13 **Description** | |
| 14 | |
| 15 For each interval in the input file, take the middle point, then extend each side windowsize/2 bps. | |
| 16 | |
| 17 </help> | |
| 18 </tool> |