# HG changeset patch
# User xuebing
# Date 1333249077 14400
# Node ID 4ac24aaed8d66e4b030880dd105515aa93104b10

Uploaded

diff -r 000000000000 -r 4ac24aaed8d6 ensembl_to_ucsc.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/ensembl_to_ucsc.xml	Sat Mar 31 22:57:57 2012 -0400
@@ -0,0 +1,18 @@
+<tool id="ensembl_to_ucsc" name="ensembl_to_ucsc">
+  <description>convert interval format</description>
+  <command interpreter="python">convertEnsembl.py $input $output $skip  </command>
+  <inputs>
+    <param name="input" format="interval" type="data" label="Original file"/>
+    <param name="skip" size="10" type="integer" value="0" label="Number of beginning lines to skip"/>
+  </inputs>
+  <outputs>
+    <data format="input" name="output" />
+  </outputs>
+  <help>
+
+**What it does**
+
+This tool convert ensembl based interval file to ucsc format: add 'chr' to chromosome number (column 1), and replace '1' and '-1' with '+' and '-' in column 6, respectively. 
+
+ </help>
+</tool>