Mercurial > repos > xuebing > fimo_to_bed
comparison fimo_to_bed.xml @ 0:7147b6e3ba06
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| author | xuebing |
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| date | Sat, 31 Mar 2012 21:40:25 -0400 |
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| -1:000000000000 | 0:7147b6e3ba06 |
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| 1 <tool id="fimo_to_bed" name="FIMO-to-BED"> | |
| 2 <description>convert FIMO output to BED</description> | |
| 3 <command interpreter="python">fimo_to_bed.py $input $rc > $output</command> | |
| 4 <inputs> | |
| 5 <param name="input" format="txt" type="data" label="FIMO output file"/> | |
| 6 <param name="rc" label="Check if the sequences are reverse complement" type="boolean" truevalue="rc" falsevalue="none" checked="False"/> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data format="bed" name="output" /> | |
| 10 </outputs> | |
| 11 <help> | |
| 12 | |
| 13 Only works if your original FIMO input fasta sequences have ids like:: | |
| 14 | |
| 15 mm9_chr15_99358448_99360448_- | |
| 16 | |
| 17 | |
| 18 </help> | |
| 19 </tool> |