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+ − 1 <tool id="genometric_correlation" name="Genometric Correlation">
+ − 2 <description>between two files of genomic intervals</description>
+ − 3 <command interpreter="Rscript --vanilla">
+ − 4 Start_GenometriCorr.R $config $query $reference $output_options $output
+ − 5 </command>
+ − 6 <inputs>
+ − 7 <param format="text" name="config" type="data" label="Configuration file"/>
+ − 8 <param format="text" name="query" type="data" label="Query intervals file"/>
+ − 9 <param format="text" name="reference" type="data" label="Reference intervals file"/>
+ − 10 <param name="output_options" type="select" label="Type of output">
+ − 11 <option value="plot">ECDF plots</option>
+ − 12 <option value="vis">Graphic visualization</option>
+ − 13 <option value="stats">Text output of statistics</option>
+ − 14 <option value="plot_vis">All</option>
+ − 15 </param>
+ − 16 </inputs>
+ − 17 <outputs>
+ − 18 <data name="output" format="pdf"/>
+ − 19 </outputs>
+ − 20 <help>
+ − 21 This tool determines the statistical relationship (if any) between two sets of genomic intervals. Output can be text only, plot (ECDF curves), or a more colorful graphic.
+ − 22 </help>
+ − 23 </tool>
