Mercurial > repos > xuebing > sharplab_interval_analysis

comparison bedclean.xml @ 22:869c7664e584

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author xuebing
date Sat, 31 Mar 2012 11:52:14 -0400
parents 783157ce2817
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21:783157ce2817 22:869c7664e584
1 <!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML 2.0//EN"> 1 <tool id="bedclean" name="clean interval">
2 <html><head> 2 <description>remove off-chromosome lines</description>
3 <title>404 Not Found</title> 3 <command interpreter="python">bedclean.py $input $genome $output > $log </command>
4 </head><body> 4 <inputs>
5 <h1>Not Found</h1> 5 <param name="input" type="data" format="interval" label="Original interval file"/>
6 <p>The requested URL /Xwuxbl/bedclean.xml was not found on this server.</p> 6
7 <hr> 7 <param name="genome" type="select" label="Select chromsome size file" >
8 <address>Apache/2.2.14 (Ubuntu) Server at rous.mit.edu Port 80</address> 8 <options from_file="chrsize.loc">
9 </body></html> 9 <column name="name" index="0"/>
10 <column name="value" index="1"/>
11 </options>
12 </param>
13
14 </inputs>
15 <outputs>
16 <data format="input" name="output" label="${tool.name} on ${on_string} (interval)"/>
17 <data format="txt" name="log" label="${tool.name} on ${on_string} (log)"/>
18 </outputs>
19 <help>
20
21 **Description**
22
23 remove lines that are
24
25 1. comment or track name lines
26
27 2. on chr*_random
28
29 3. or have negative coordinates
30
31 4. or the end is larger than chromosome size
32
33
34 </help>
35 </tool>