Mercurial > repos > xuebing > sharplab_seq_motif
annotate mytools/fastashuffle1.xml @ 5:84e2c77a6abd
Uploaded
| author | xuebing |
|---|---|
| date | Fri, 16 Mar 2012 14:01:16 -0400 |
| parents | 39217fa39ff2 |
| children |
| rev | line source |
|---|---|
| 0 | 1 <tool id="seqshuffle" name="shuffle sequences"> |
| 2 <description>preserving mono-nucleotide frequency</description> | |
| 3 <command>cat $input | fasta-shuffle-letters > $output </command> | |
| 4 <inputs> | |
| 5 <param name="input" type="data" format="fasta" label="Original FASTA sequence file"/> | |
| 6 </inputs> | |
| 7 <outputs> | |
| 8 <data format="fasta" name="output" /> | |
| 9 </outputs> | |
| 10 <help> | |
| 11 | |
| 12 **Description** | |
| 13 | |
| 14 shuffle the position of nucleotides in each sequence, preserving the frequency of nucleotides in that sequence, but do not preserve di-nucleotide frequency. | |
| 15 | |
| 16 </help> | |
| 17 </tool> |